Os12g0291000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, hold transcript.
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Os12g0291000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, hold transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.29 | 0.374 | 7.67 | 0.144 | 0.323 | -0.967 | -0.726 | 0.501 | 0.384 | 20.3 | 75.26 | 2131 | -- | -- |
| 63.55 | 0.371 | 7.67 | 0.0988 | 0.316 | -0.938 | -0.613 | -- | 0.369 | 20.3 | 75.79 | 2131 | -- | -- |
| 64.71 | 0.375 | 7.67 | 0.118 | 0.292 | -0.9 | -- | 0.0897 | 0.375 | 20.2 | 75.66 | 2131 | -- | -- |
| 64.69 | 0.375 | 7.67 | 0.106 | 0.307 | -0.918 | -- | -- | 0.369 | 20.3 | 75.7 | 2131 | -- | -- |
| 66.26 | 0.379 | 7.66 | 0.121 | -- | -0.904 | -- | 0.439 | 0.404 | -- | 77 | 2803 | -- | -- |
| 78.51 | 0.415 | 7.68 | 0.0108 | 0.0242 | -- | -0.542 | -- | 0.297 | 21.3 | -- | -- | -- | -- |
| 79.55 | 0.418 | 7.68 | 0.0296 | 0.0308 | -- | -- | -- | 0.297 | 23.8 | -- | -- | -- | -- |
| 65.61 | 0.377 | 7.66 | 0.129 | -- | -0.85 | -- | -- | 0.37 | -- | 75.94 | 1419 | -- | -- |
| 64.98 | 0.375 | 7.68 | -- | 0.302 | -0.909 | -- | -- | 0.356 | 20.3 | 75.48 | 2131 | -- | -- |
| 79.61 | 0.417 | 7.68 | 0.0306 | -- | -- | -- | -- | 0.297 | -- | -- | -- | -- | -- |
| 79.57 | 0.417 | 7.68 | -- | 0.0312 | -- | -- | -- | 0.294 | 23.9 | -- | -- | -- | -- |
| 66.03 | 0.378 | 7.67 | -- | -- | -0.83 | -- | -- | 0.357 | -- | 75.45 | 1424 | -- | -- |
| 79.63 | 0.417 | 7.68 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.91 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 61.10 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 4 | 63.08 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 5 | 63.56 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 7 | 63.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 8 | 63.60 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 10 | 63.71 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 11 | 63.74 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 23 | 63.81 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 41 | 63.96 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 48 | 64.04 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 57 | 64.11 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 61 | 64.14 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 66 | 64.16 | humidity | 80.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 67 | 64.16 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 76 | 64.22 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 87 | 64.29 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 130 | 64.41 | humidity | 70.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 141 | 64.44 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 145 | 64.46 | humidity | 80.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 150 | 64.47 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 164 | 64.52 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 168 | 64.53 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 170 | 64.53 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 245 | 64.66 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 303 | 64.76 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 10 | 17 |
| 320 | 64.79 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 376 | 64.84 | humidity | 90.0 | 720 | > th | dose dependent | sin | 22 | NA |
| 386 | 64.85 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 387 | 64.85 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 407 | 64.87 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 472 | 64.91 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 506 | 64.94 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 524 | 64.95 | humidity | 50.0 | 1440 | > th | dose dependent | no | NA | NA |
| 542 | 64.96 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 549 | 64.96 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 550 | 64.97 | humidity | 60.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 570 | 64.98 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 580 | 64.99 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 591 | 64.99 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 607 | 65.00 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 611 | 65.01 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 15 |
| 622 | 65.02 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 13 |
| 642 | 65.04 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 734 | 65.12 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 761 | 65.14 | humidity | 60.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 798 | 65.18 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 13 |
| 808 | 65.19 | wind | 1.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 817 | 65.20 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 850 | 65.22 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 882 | 65.24 | wind | 9.0 | 43200 | < th | dose dependent | sin | 3 | NA |
| 902 | 65.26 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 20 |
| 918 | 65.27 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 924 | 65.27 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 22 |
| 928 | 65.28 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 18 |
| 932 | 65.28 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 949 | 65.28 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 18 |
| 964 | 65.29 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 20 |
| 970 | 65.30 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 971 | 65.30 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 981 | 65.31 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 989 | 65.32 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 990 | 65.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 9 |