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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0289600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.85 (0.04) R2 : 0.258
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.544 (0.102) R2dC : 0.0484 R2C : 0.0829
β3 : 1.28 (0.135) R2dE : 0.17 R2E : 0.209
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0344 (0.0876) R2dN8 : 0.00034 R2N8 : 0.00457
σ : 0.742
deviance : 253.91
__
_____
C
peak time of C : 3.53
E
wheather : temperature
threshold : 20.15
memory length : 1635
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.46
open length of G : 0.426

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
252.73 0.747 3.84 0.137 0.548 1.28 -0.126 0.85 0.0776 3.58 20.15 1598 5.37 0.641
254.03 0.742 3.86 0.017 0.557 1.31 0.0223 -- 0.0293 3.59 20.2 1629 5.38 0.716
252.28 0.74 3.85 0.162 0.549 1.3 -- 0.92 0.0579 3.55 20.15 1632 5.43 0.65
253.9 0.742 3.85 -0.0433 0.549 1.31 -- -- 0.0406 3.56 20.18 1633 5.48 0.433
268.27 0.763 3.85 0.159 -- 1.43 -- 0.912 0.0497 -- 20.1 1636 5.38 0.633
301.92 0.815 3.79 0.182 0.767 -- 0.0853 -- 0.309 4.5 -- -- -- --
301.94 0.814 3.79 0.182 0.768 -- -- -- 0.309 4.48 -- -- -- --
269.56 0.765 3.86 -0.0687 -- 1.43 -- -- -0.000942 -- 20.2 1638 5.39 0.48
253.91 0.742 3.85 -- 0.544 1.28 -- -- 0.0344 3.53 20.15 1635 5.46 0.426
333.46 0.853 3.79 0.212 -- -- -- -- 0.329 -- -- -- -- --
302.81 0.814 3.79 -- 0.771 -- -- -- 0.288 4.47 -- -- -- --
269.68 0.765 3.87 -- -- 1.42 -- -- 0.00569 -- 20.19 1638 5.4 0.475
334.64 0.854 3.8 -- -- -- -- -- 0.305 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 257.19 wind 1.0 14400 < th dose independent rect. 24 2
2 257.91 wind 1.0 14400 < th dose dependent rect. 24 2
3 258.39 wind 1.0 14400 > th dose independent rect. 24 2
4 258.76 humidity 90.0 14400 < th dose dependent rect. 5 2
9 261.40 humidity 50.0 14400 > th dose dependent rect. 3 4
22 262.32 wind 1.0 43200 < th dose independent rect. 12 1
23 262.38 wind 1.0 43200 > th dose independent rect. 12 1
24 262.63 humidity 50.0 14400 > th dose dependent rect. 5 1
36 263.02 humidity 90.0 14400 < th dose dependent rect. 24 7
45 263.67 wind 1.0 43200 < th dose independent rect. 10 4
52 263.97 wind 1.0 43200 > th dose independent rect. 10 4
61 264.47 humidity 90.0 14400 < th dose dependent rect. 24 1
73 264.66 wind 1.0 43200 < th dose dependent rect. 10 4
77 264.79 precipitation 0.1 43200 > th dose dependent rect. 19 2
83 264.91 radiation 40.0 43200 > th dose independent rect. 13 1
89 265.03 wind 1.0 14400 < th dose independent rect. 22 1
90 265.22 humidity 70.0 43200 < th dose independent rect. 16 1
95 265.38 atmosphere 1010.0 14400 > th dose independent rect. 5 1
99 265.42 radiation 10.0 43200 > th dose independent rect. 17 13
107 265.49 precipitation 0.1 43200 > th dose dependent rect. 2 1
108 265.55 radiation 40.0 43200 < th dose independent rect. 13 1
109 265.55 wind 7.0 14400 > th dose dependent rect. 15 4
110 265.56 humidity 70.0 43200 > th dose independent rect. 16 1
111 265.59 radiation 10.0 43200 > th dose independent rect. 17 1
126 265.64 wind 1.0 14400 > th dose independent rect. 6 3
129 265.71 wind 7.0 14400 > th dose independent rect. 15 4
132 265.79 atmosphere 1010.0 14400 < th dose independent rect. 5 1
133 265.79 precipitation 0.1 43200 > th dose independent rect. 23 1
134 265.79 precipitation 0.1 43200 > th dose dependent rect. 23 1
141 265.84 precipitation 0.1 43200 < th dose independent rect. 23 1
142 265.84 precipitation 0.1 43200 < th dose dependent rect. 23 1
154 265.89 wind 1.0 14400 < th dose dependent rect. 22 11
155 265.89 wind 1.0 14400 < th dose dependent rect. 22 16
166 266.04 wind 1.0 14400 < th dose dependent rect. 8 1
176 266.15 radiation 30.0 43200 > th dose dependent rect. 13 1
182 266.21 wind 1.0 14400 > th dose independent rect. 5 10
183 266.21 wind 1.0 14400 < th dose independent rect. 5 10
185 266.29 radiation 20.0 43200 > th dose independent rect. 13 1
187 266.29 wind 1.0 14400 < th dose independent rect. 6 3
210 266.43 wind 7.0 14400 < th dose independent rect. 15 4
218 266.47 wind 1.0 14400 < th dose independent rect. 8 1
220 266.48 precipitation 0.1 43200 > th dose independent rect. 2 1
223 266.51 radiation 10.0 43200 > th dose dependent rect. 13 1
234 266.56 wind 1.0 14400 < th dose dependent rect. 5 9
238 266.59 precipitation 0.1 43200 < th dose independent rect. 2 1
241 266.59 precipitation 0.1 43200 < th dose dependent rect. 2 1
244 266.60 radiation 40.0 43200 < th dose dependent rect. 13 1
260 266.73 radiation 30.0 43200 < th dose dependent rect. 13 5
262 266.74 humidity 50.0 14400 > th dose dependent rect. 2 1
265 266.74 radiation 30.0 43200 < th dose dependent rect. 13 10
267 266.75 humidity 80.0 43200 < th dose independent rect. 16 11
281 266.76 radiation 20.0 43200 < th dose dependent rect. 16 1
283 266.77 radiation 20.0 43200 < th dose independent rect. 13 1
316 266.79 wind 1.0 14400 < th dose dependent rect. 5 21
335 266.84 humidity 80.0 43200 > th dose independent rect. 18 1
343 266.87 radiation 40.0 43200 < th dose dependent sin 15 NA
352 266.88 radiation 1.0 43200 > th dose dependent rect. 12 6
373 266.91 radiation 1.0 43200 > th dose dependent rect. 16 1
390 266.94 radiation 10.0 43200 < th dose independent rect. 16 1
422 266.95 radiation 1.0 43200 > th dose dependent rect. 15 3
450 266.99 radiation 1.0 43200 > th dose dependent sin 15 NA
456 267.00 atmosphere 1015.0 43200 > th dose independent rect. 20 2
469 267.02 wind 1.0 43200 > th dose independent rect. 22 1
497 267.04 humidity 70.0 43200 < th dose independent rect. 12 6
511 267.06 humidity 80.0 43200 > th dose independent rect. 17 8
553 267.10 humidity 80.0 43200 > th dose independent rect. 16 13
579 267.15 atmosphere 1015.0 43200 < th dose independent rect. 21 1
581 267.15 wind 1.0 14400 < th dose independent rect. 22 11
591 267.17 atmosphere 1015.0 43200 < th dose independent rect. 20 4
704 267.31 humidity 70.0 43200 > th dose independent rect. 10 8
717 267.32 wind 1.0 14400 < th dose independent rect. 5 21
874 267.42 atmosphere 1010.0 14400 < th dose independent rect. 14 1
914 267.45 wind 1.0 14400 < th dose dependent rect. 5 4
922 267.47 radiation 40.0 43200 > th dose independent rect. 11 21
951 267.49 radiation 20.0 43200 < th dose independent rect. 13 16
992 267.54 radiation 40.0 43200 < th dose independent rect. 12 17