Os12g0288000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os12g0288000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 128.08 | 0.532 | 3.25 | 0.153 | 0.221 | 10.1 | 0.131 | 21 | 0.0515 | 5.34 | 1016 | 1566 | -- | -- |
| 139.96 | 0.555 | 3.17 | 0.0245 | 0.232 | -0.157 | 0.204 | -- | 0.0408 | 5.86 | 1013 | 1656 | -- | -- |
| 127.86 | 0.527 | 3.25 | 0.173 | 0.219 | 10.5 | -- | 21.7 | 0.0483 | 5.11 | 1016 | 1547 | -- | -- |
| 138.73 | 0.549 | 3.17 | 0.0232 | 0.257 | 0.469 | -- | -- | 0.0365 | 5.91 | 1014 | 2211 | -- | -- |
| 129.87 | 0.531 | 3.27 | 0.159 | -- | 12.1 | -- | 25 | 0.0289 | -- | 1016 | 1563 | -- | -- |
| 140.06 | 0.555 | 3.17 | 0.0262 | 0.232 | -- | 0.206 | -- | 0.0432 | 5.93 | -- | -- | -- | -- |
| 140.16 | 0.554 | 3.17 | 0.0278 | 0.233 | -- | -- | -- | 0.0423 | 5.89 | -- | -- | -- | -- |
| 141.71 | 0.554 | 3.17 | 0.0625 | -- | 0.452 | -- | -- | 0.0658 | -- | 1013 | 2135 | -- | -- |
| 138.72 | 0.549 | 3.17 | -- | 0.244 | 0.466 | -- | -- | 0.0549 | 5.72 | 1013 | 2220 | -- | -- |
| 142.99 | 0.559 | 3.17 | 0.0348 | -- | -- | -- | -- | 0.0477 | -- | -- | -- | -- | -- |
| 140.19 | 0.554 | 3.17 | -- | 0.234 | -- | -- | -- | 0.0392 | 5.88 | -- | -- | -- | -- |
| 141.8 | 0.555 | 3.17 | -- | -- | 0.44 | -- | -- | 0.0592 | -- | 1013 | 2141 | -- | -- |
| 143.02 | 0.558 | 3.18 | -- | -- | -- | -- | -- | 0.0439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.42 | radiation | 10 | 30 | > th | dose independent | rect. | 7 | 1 |
| 2 | 125.88 | atmosphere | 1010 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 58 | 125.98 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 78 | 126.29 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 89 | 126.37 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 90 | 126.38 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 101 | 126.39 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 105 | 126.44 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 5 | 1 |
| 119 | 126.47 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 135 | 126.47 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 175 | 126.90 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 201 | 127.40 | atmosphere | 1015 | 1440 | > th | dose dependent | sin | 2 | NA |
| 310 | 127.63 | wind | 9 | 30 | > th | dose dependent | sin | 6 | NA |
| 337 | 128.04 | humidity | 80 | 10 | < th | dose independent | rect. | 7 | 1 |
| 339 | 128.14 | wind | 9 | 30 | > th | dose independent | rect. | 11 | 1 |
| 341 | 128.17 | radiation | 10 | 10 | > th | dose independent | rect. | 15 | 17 |
| 377 | 128.82 | atmosphere | 1015 | 1440 | > th | dose independent | sin | 3 | NA |
| 427 | 129.09 | atmosphere | 1015 | 1440 | < th | dose independent | sin | 3 | NA |
| 538 | 129.35 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 544 | 129.46 | wind | 9 | 30 | < th | dose independent | sin | 6 | NA |
| 570 | 129.51 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 16 |
| 575 | 129.52 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 18 |
| 664 | 129.79 | radiation | 10 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 677 | 129.97 | radiation | 10 | 10 | < th | dose independent | rect. | 12 | 1 |
| 682 | 130.02 | wind | 9 | 30 | > th | dose independent | sin | 5 | NA |
| 689 | 130.15 | humidity | 80 | 10 | < th | dose independent | rect. | 24 | 8 |
| 718 | 130.58 | atmosphere | 1010 | 90 | > th | dose independent | rect. | 8 | 1 |
| 719 | 130.58 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 9 | 1 |
| 854 | 131.01 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 862 | 131.10 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 1 |
| 868 | 131.18 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 884 | 131.31 | atmosphere | 1005 | 30 | < th | dose independent | rect. | 14 | 3 |
| 973 | 132.04 | radiation | 40 | 90 | > th | dose independent | rect. | 15 | 1 |
| 991 | 132.04 | radiation | 40 | 90 | > th | dose dependent | rect. | 15 | 1 |