Os12g0287300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SufS.
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Os12g0287300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SufS.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.81 | 0.243 | 11.7 | 0.545 | 0.247 | 0.808 | 0.65 | -0.634 | -0.132 | 19 | 19 | 4624 | -- | -- |
| 26.69 | 0.241 | 11.7 | 0.531 | 0.27 | 1.14 | 0.58 | -- | -0.162 | 18.8 | 18.1 | 7853 | -- | -- |
| 27.35 | 0.244 | 11.7 | 0.599 | 0.275 | 0.873 | -- | -0.632 | -0.122 | 18.5 | 18.6 | 7800 | -- | -- |
| 27.32 | 0.243 | 11.7 | 0.611 | 0.278 | 1.15 | -- | -- | -0.104 | 18.5 | 18.5 | 7810 | -- | -- |
| 30.88 | 0.259 | 11.7 | 0.628 | -- | 1.08 | -- | -0.248 | -0.107 | -- | 18.5 | 7803 | -- | -- |
| 40.7 | 0.299 | 11.8 | -0.0852 | 0.256 | -- | 0.564 | -- | -0.366 | 18.8 | -- | -- | -- | -- |
| 41.41 | 0.301 | 11.8 | -0.0933 | 0.263 | -- | -- | -- | -0.364 | 18.2 | -- | -- | -- | -- |
| 30.68 | 0.258 | 11.7 | 0.485 | -- | 1.02 | -- | -- | -0.152 | -- | 18.4 | 4462 | -- | -- |
| 30.87 | 0.259 | 11.8 | -- | 0.247 | 0.78 | -- | -- | -0.265 | 18.3 | 17.5 | 4686 | -- | -- |
| 45 | 0.313 | 11.8 | -0.101 | -- | -- | -- | -- | -0.37 | -- | -- | -- | -- | -- |
| 41.64 | 0.302 | 11.8 | -- | 0.264 | -- | -- | -- | -0.353 | 18.2 | -- | -- | -- | -- |
| 33.35 | 0.269 | 11.8 | -- | -- | 0.868 | -- | -- | -0.258 | -- | 18.06 | 3242 | -- | -- |
| 45.27 | 0.314 | 11.8 | -- | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.36 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 14 | 24.39 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 16 | 24.62 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 19 | 24.64 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 27 | 24.67 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 43 | 24.75 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 51 | 24.77 | humidity | 60 | 43200 | < th | dose dependent | sin | 5 | NA |
| 87 | 24.89 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 97 | 24.91 | humidity | 50 | 43200 | > th | dose independent | rect. | 21 | 20 |
| 103 | 24.92 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 146 | 24.98 | humidity | 50 | 43200 | > th | dose independent | no | NA | NA |
| 223 | 25.01 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 224 | 25.02 | humidity | 50 | 43200 | > th | dose independent | sin | 2 | NA |
| 234 | 25.03 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 237 | 25.03 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 13 |
| 247 | 25.03 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 257 | 25.04 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 276 | 25.05 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 305 | 25.06 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 311 | 25.06 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 348 | 25.07 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 457 | 25.12 | humidity | 50 | 43200 | < th | dose independent | sin | 2 | NA |
| 474 | 25.12 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 499 | 25.13 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 512 | 25.14 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 513 | 25.14 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 599 | 25.16 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 638 | 25.18 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 729 | 25.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 730 | 25.24 | humidity | 70 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 733 | 25.24 | humidity | 70 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 762 | 25.27 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 9 |
| 797 | 25.29 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 831 | 25.30 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 835 | 25.30 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 862 | 25.31 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 887 | 25.32 | humidity | 70 | 43200 | < th | dose independent | sin | 4 | NA |
| 888 | 25.32 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 903 | 25.32 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 907 | 25.32 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 14 |
| 914 | 25.33 | humidity | 70 | 43200 | > th | dose independent | sin | 4 | NA |
| 949 | 25.34 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 972 | 25.34 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 14 |