Os12g0287200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mago nashi protein.
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Os12g0287200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mago nashi protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.83 | 0.198 | 13.5 | -0.621 | 0.173 | 0.548 | 0.0479 | -1.8 | -0.0759 | 16 | 18 | 2502 | -- | -- |
| 20.55 | 0.211 | 13.4 | -0.118 | 0.123 | 0.596 | 0.165 | -- | 0.0607 | 15.9 | 14.41 | 2094 | -- | -- |
| 17.83 | 0.197 | 13.5 | -0.617 | 0.171 | 0.551 | -- | -1.8 | -0.0751 | 15.9 | 17.91 | 2459 | -- | -- |
| 20.62 | 0.211 | 13.4 | -0.122 | 0.13 | 0.609 | -- | -- | 0.0573 | 15.6 | 14.3 | 2098 | -- | -- |
| 18.72 | 0.201 | 13.5 | -0.577 | -- | 0.579 | -- | -1.76 | -0.0677 | -- | 18 | 1983 | -- | -- |
| 27.18 | 0.244 | 13.4 | 0.0904 | 0.143 | -- | 0.112 | -- | 0.175 | 17.1 | -- | -- | -- | -- |
| 27.21 | 0.244 | 13.4 | 0.0903 | 0.144 | -- | -- | -- | 0.176 | 17.3 | -- | -- | -- | -- |
| 21.4 | 0.215 | 13.4 | -0.124 | -- | 0.63 | -- | -- | 0.0538 | -- | 14.09 | 1933 | -- | -- |
| 20.95 | 0.213 | 13.4 | -- | 0.126 | 0.564 | -- | -- | 0.0793 | 15.9 | 13.91 | 2024 | -- | -- |
| 28.29 | 0.249 | 13.4 | 0.0853 | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
| 27.42 | 0.245 | 13.4 | -- | 0.143 | -- | -- | -- | 0.166 | 17.4 | -- | -- | -- | -- |
| 21.75 | 0.217 | 13.4 | -- | -- | 0.578 | -- | -- | 0.0754 | -- | 13.44 | 1922 | -- | -- |
| 28.48 | 0.249 | 13.4 | -- | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 3 | 17.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 7 | 17.19 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 10 | 17.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 11 | 17.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 15 | 17.32 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 25 | 17.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 26 | 17.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 30 | 17.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 37 | 17.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 40 | 17.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 42 | 17.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 45 | 17.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 46 | 17.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 13 |
| 48 | 17.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 60 | 17.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 14 |
| 77 | 17.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 80 | 17.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 83 | 17.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 87 | 17.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 11 |
| 91 | 17.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 137 | 17.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 147 | 17.53 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 200 | 17.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 241 | 17.59 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 253 | 17.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 411 | 17.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 430 | 17.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 485 | 17.75 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 522 | 17.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 523 | 17.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 607 | 17.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 644 | 17.84 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 655 | 17.84 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 660 | 17.85 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 716 | 17.88 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 717 | 17.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 721 | 17.88 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 809 | 17.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 948 | 18.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 992 | 18.03 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |