Os12g0285600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oxysterol-binding protein family protein.
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Os12g0285600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oxysterol-binding protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.6 | 0.427 | 9.76 | 0.0376 | 1.34 | -1.51 | 1.12 | -0.859 | -0.38 | 6.76 | 0.9998 | 1468 | -- | -- |
| 82.77 | 0.424 | 9.76 | 0.0562 | 1.34 | -1.33 | 1.26 | -- | -0.367 | 6.6 | 1.256 | 1493 | -- | -- |
| 85.78 | 0.431 | 9.76 | 0.0738 | 1.34 | -1.53 | -- | -0.986 | -0.378 | 6.78 | 1.027 | 1471 | -- | -- |
| 86.06 | 0.432 | 9.77 | 0.00201 | 1.32 | -1.33 | -- | -- | -0.382 | 6.74 | 1.5 | 1478 | -- | -- |
| 178.51 | 0.622 | 9.77 | 0.0671 | -- | -1.76 | -- | -1.04 | -0.366 | -- | 1.17 | 1483 | -- | -- |
| 101.26 | 0.472 | 9.73 | 0.257 | 1.38 | -- | 1.08 | -- | -0.228 | 7.02 | -- | -- | -- | -- |
| 104.28 | 0.478 | 9.73 | 0.278 | 1.38 | -- | -- | -- | -0.23 | 7.09 | -- | -- | -- | -- |
| 179.17 | 0.623 | 9.77 | 0.056 | -- | -1.46 | -- | -- | -0.354 | -- | 2.003 | 1485 | -- | -- |
| 86.04 | 0.432 | 9.77 | -- | 1.34 | -1.34 | -- | -- | -0.393 | 6.73 | 1.5 | 1478 | -- | -- |
| 204.74 | 0.669 | 9.76 | 0.305 | -- | -- | -- | -- | -0.205 | -- | -- | -- | -- | -- |
| 106.32 | 0.482 | 9.74 | -- | 1.38 | -- | -- | -- | -0.261 | 7.07 | -- | -- | -- | -- |
| 178.74 | 0.623 | 9.8 | -- | -- | -1.53 | -- | -- | -0.402 | -- | 1.995 | 1485 | -- | -- |
| 207.2 | 0.672 | 9.77 | -- | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 2 | 74.28 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 5 | 74.66 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 6 | 74.91 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 19 |
| 11 | 75.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 25 | 76.20 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 28 | 76.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 15 |
| 47 | 77.14 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 68 | 78.02 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 20 |
| 70 | 78.08 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 80 | 78.41 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 13 |
| 87 | 78.57 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 128 | 79.39 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 6 |
| 129 | 79.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 132 | 79.52 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 146 | 79.70 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 150 | 79.76 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 152 | 79.79 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 157 | 79.86 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 16 |
| 181 | 80.13 | humidity | 60 | 720 | > th | dose dependent | sin | 17 | NA |
| 186 | 80.19 | humidity | 80 | 720 | > th | dose dependent | rect. | 10 | 13 |
| 190 | 80.23 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 233 | 80.62 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 270 | 80.82 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 11 |
| 339 | 81.22 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 356 | 81.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 374 | 81.36 | humidity | 90 | 720 | > th | dose dependent | sin | 20 | NA |
| 376 | 81.39 | humidity | 90 | 720 | < th | dose independent | rect. | 18 | 5 |
| 387 | 81.45 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 410 | 81.54 | humidity | 70 | 720 | > th | dose independent | sin | 14 | NA |
| 414 | 81.56 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 419 | 81.57 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 463 | 81.70 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 19 |
| 468 | 81.72 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 471 | 81.73 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 474 | 81.74 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 486 | 81.80 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 3 |
| 535 | 81.95 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 555 | 82.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 559 | 82.04 | humidity | 90 | 720 | < th | dose independent | rect. | 10 | 14 |
| 560 | 82.04 | radiation | 1 | 1440 | < th | dose dependent | sin | 17 | NA |
| 602 | 82.17 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 640 | 82.27 | humidity | 80 | 720 | > th | dose independent | sin | 20 | NA |
| 641 | 82.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 649 | 82.29 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 16 |
| 692 | 82.37 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 11 |
| 823 | 82.53 | temperature | 25 | 720 | > th | dose dependent | sin | 16 | NA |
| 861 | 82.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 870 | 82.61 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 926 | 82.71 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 15 |
| 934 | 82.73 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 949 | 82.74 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 958 | 82.76 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |