Os12g0282000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0282000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.12 | 0.479 | 3.48 | -3.69 | 0.136 | 43 | -0.761 | -249 | -0.0457 | 20.2 | 995.9 | 669 | -- | -- |
| 121.56 | 0.517 | 2.94 | -0.35 | 0.211 | 0.00612 | -0.487 | -- | -0.067 | 20.9 | 995.9 | 669 | -- | -- |
| 105.66 | 0.479 | 3.51 | -3.83 | 0.141 | 42.7 | -- | -248 | -0.0663 | 21.3 | 996.1 | 662 | -- | -- |
| 108.04 | 0.484 | 2.92 | -0.415 | 0.0735 | 1.66 | -- | -- | -0.0816 | 19.6 | 994.5 | 575 | -- | -- |
| 106.88 | 0.481 | 3.51 | -3.86 | -- | 42.5 | -- | -247 | -0.0514 | -- | 996.1 | 664 | -- | -- |
| 121.56 | 0.517 | 2.94 | -0.35 | 0.211 | -- | -0.487 | -- | -0.0671 | 20.9 | -- | -- | -- | -- |
| 122.29 | 0.518 | 2.94 | -0.335 | 0.212 | -- | -- | -- | -0.0678 | 21.5 | -- | -- | -- | -- |
| 107.92 | 0.484 | 2.93 | -0.378 | -- | 2.08 | -- | -- | -0.0503 | -- | 994.6 | 565 | -- | -- |
| 110.43 | 0.489 | 2.93 | -- | 0.163 | 1.88 | -- | -- | -0.0332 | 21 | 994.5 | 583 | -- | -- |
| 124.94 | 0.522 | 2.94 | -0.334 | -- | -- | -- | -- | -0.0684 | -- | -- | -- | -- | -- |
| 125.25 | 0.524 | 2.93 | -- | 0.212 | -- | -- | -- | -0.0305 | 21.4 | -- | -- | -- | -- |
| 111.67 | 0.492 | 2.92 | -- | -- | 2.02 | -- | -- | -0.0086 | -- | 994.5 | 557 | -- | -- |
| 127.88 | 0.528 | 2.93 | -- | -- | -- | -- | -- | -0.0313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.88 | radiation | 1 | 720 | < th | dose independent | rect. | 12 | 3 |
| 2 | 93.88 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 19 | 95.95 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 1 |
| 21 | 95.95 | humidity | 90 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 37 | 97.54 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 19 | 4 |
| 41 | 98.02 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 20 | 1 |
| 45 | 98.49 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 20 | 5 |
| 51 | 98.82 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 19 | 2 |
| 163 | 101.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 164 | 101.54 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 23 | 19 |
| 165 | 101.61 | atmosphere | 995 | 1440 | > th | dose independent | sin | 9 | NA |
| 172 | 101.70 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 173 | 101.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 4 |
| 194 | 101.95 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 196 | 102.01 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 200 | 102.05 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 3 |
| 212 | 102.19 | atmosphere | 995 | 720 | < th | dose independent | sin | 8 | NA |
| 229 | 102.48 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 231 | 102.49 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 240 | 102.56 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 339 | 103.25 | atmosphere | 995 | 720 | < th | dose dependent | sin | 8 | NA |
| 344 | 103.30 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 17 |
| 347 | 103.35 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 365 | 103.64 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 15 |
| 377 | 103.65 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 8 |
| 479 | 103.96 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 501 | 104.08 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 18 | 6 |
| 540 | 104.41 | humidity | 90 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 647 | 104.63 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 661 | 104.73 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 663 | 104.76 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 673 | 104.83 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 677 | 104.86 | atmosphere | 995 | 720 | < th | dose independent | no | NA | NA |