Os12g0281600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0281600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.66 | 0.662 | 3.07 | 0.0633 | 0.633 | -0.0891 | 0.681 | 1.95 | 0.418 | 12.6 | 70.26 | 8 | -- | -- |
| 209.54 | 0.679 | 3.05 | 0.156 | 0.581 | -0.166 | -0.562 | -- | 0.43 | 12 | 68.01 | 5 | -- | -- |
| 199.34 | 0.663 | 3.07 | 0.0917 | 0.621 | -0.104 | -- | 1.58 | 0.423 | 12.3 | 70.26 | 8 | -- | -- |
| 208.95 | 0.678 | 3.06 | 0.108 | 0.468 | -0.262 | -- | -- | 0.424 | 11.4 | 77 | 10 | -- | -- |
| 215.49 | 0.687 | 3.07 | 0.0506 | -- | -0.403 | -- | 1.62 | 0.426 | -- | 71 | 9 | -- | -- |
| 211.04 | 0.681 | 3.05 | 0.16 | 0.686 | -- | -0.576 | -- | 0.43 | 12.3 | -- | -- | -- | -- |
| 212.47 | 0.683 | 3.06 | 0.138 | 0.689 | -- | -- | -- | 0.427 | 12.4 | -- | -- | -- | -- |
| 217.94 | 0.691 | 3.07 | 0.0801 | -- | -0.469 | -- | -- | 0.422 | -- | 77 | 10 | -- | -- |
| 209.25 | 0.677 | 3.06 | -- | 0.462 | -0.269 | -- | -- | 0.412 | 11.4 | 77 | 10 | -- | -- |
| 242.27 | 0.727 | 3.07 | 0.114 | -- | -- | -- | -- | 0.416 | -- | -- | -- | -- | -- |
| 212.97 | 0.683 | 3.06 | -- | 0.687 | -- | -- | -- | 0.412 | 12.4 | -- | -- | -- | -- |
| 218.11 | 0.69 | 3.07 | -- | -- | -0.47 | -- | -- | 0.414 | -- | 77 | 10 | -- | -- |
| 242.61 | 0.727 | 3.07 | -- | -- | -- | -- | -- | 0.403 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.76 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 9 | 183.76 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 25 | 191.84 | temperature | 20 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 26 | 192.02 | temperature | 20 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 27 | 192.10 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 10 |
| 32 | 192.60 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 12 |
| 46 | 193.41 | temperature | 20 | 270 | < th | dose dependent | rect. | 14 | 6 |
| 74 | 194.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 12 |
| 90 | 195.28 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 15 |
| 100 | 195.68 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 11 |
| 102 | 195.77 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 8 |
| 141 | 196.27 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 8 |
| 146 | 196.30 | humidity | 70 | 10 | < th | dose independent | rect. | 15 | 20 |
| 149 | 196.37 | temperature | 30 | 270 | < th | dose dependent | sin | 17 | NA |
| 150 | 196.41 | temperature | 15 | 30 | > th | dose dependent | rect. | 16 | 14 |
| 159 | 196.51 | atmosphere | 1015 | 30 | < th | dose independent | rect. | 11 | 23 |
| 181 | 196.73 | temperature | 25 | 270 | < th | dose dependent | sin | 19 | NA |
| 186 | 196.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 4 |
| 187 | 196.76 | radiation | 20 | 30 | < th | dose dependent | rect. | 16 | 22 |
| 191 | 196.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 7 |
| 193 | 196.81 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 1 |
| 210 | 196.92 | temperature | 20 | 90 | < th | dose independent | sin | 19 | NA |
| 215 | 196.93 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 16 | 13 |
| 247 | 197.13 | temperature | 25 | 30 | > th | dose independent | rect. | 15 | 1 |
| 253 | 197.17 | temperature | 25 | 90 | > th | dose independent | sin | 3 | NA |
| 261 | 197.20 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 2 |
| 319 | 197.52 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 321 | 197.52 | temperature | 15 | 30 | > th | dose dependent | rect. | 16 | 7 |
| 337 | 197.63 | radiation | 10 | 10 | > th | dose independent | rect. | 8 | 8 |
| 355 | 197.69 | humidity | 70 | 10 | > th | dose independent | rect. | 9 | 23 |
| 356 | 197.69 | radiation | 10 | 10 | > th | dose independent | rect. | 8 | 23 |
| 363 | 197.71 | humidity | 70 | 10 | > th | dose independent | rect. | 7 | 23 |
| 364 | 197.71 | temperature | 20 | 10 | > th | dose dependent | sin | 2 | NA |
| 369 | 197.73 | atmosphere | 1015 | 30 | < th | dose independent | rect. | 16 | 14 |
| 372 | 197.74 | humidity | 80 | 30 | < th | dose independent | rect. | 8 | 8 |
| 376 | 197.75 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 11 |
| 378 | 197.76 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 22 | 23 |
| 390 | 197.81 | temperature | 20 | 30 | > th | dose independent | rect. | 16 | 7 |
| 392 | 197.81 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 13 |
| 403 | 197.84 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 16 | 7 |
| 417 | 197.89 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 17 |
| 418 | 197.90 | radiation | 10 | 10 | > th | dose independent | rect. | 15 | 1 |
| 420 | 197.90 | temperature | 25 | 10 | > th | dose dependent | sin | 5 | NA |
| 427 | 197.91 | temperature | 25 | 90 | < th | dose dependent | rect. | 10 | 18 |
| 458 | 197.98 | atmosphere | 1015 | 10 | < th | dose independent | rect. | 16 | 23 |
| 518 | 198.21 | atmosphere | 1015 | 720 | < th | dose independent | rect. | 7 | 16 |
| 573 | 198.39 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 7 |
| 599 | 198.47 | humidity | 70 | 10 | > th | dose independent | rect. | 9 | 21 |
| 606 | 198.49 | humidity | 80 | 270 | > th | dose independent | rect. | 9 | 6 |
| 607 | 198.49 | radiation | 1 | 270 | > th | dose independent | rect. | 5 | 11 |
| 613 | 198.50 | radiation | 10 | 10 | > th | dose independent | rect. | 15 | 20 |
| 638 | 198.56 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 13 |
| 676 | 198.61 | humidity | 70 | 10 | < th | dose independent | rect. | 9 | 11 |
| 707 | 198.65 | radiation | 20 | 30 | > th | dose independent | rect. | 8 | 3 |
| 730 | 198.66 | wind | 9 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 764 | 198.73 | wind | 7 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 793 | 198.78 | humidity | 80 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 801 | 198.81 | humidity | 80 | 270 | > th | dose independent | rect. | 8 | 9 |
| 807 | 198.82 | humidity | 90 | 30 | < th | dose independent | rect. | 6 | 10 |
| 814 | 198.83 | radiation | 10 | 10 | > th | dose independent | rect. | 12 | 23 |
| 835 | 198.86 | humidity | 90 | 30 | < th | dose independent | rect. | 23 | 17 |
| 836 | 198.86 | temperature | 10 | 270 | > th | dose dependent | sin | 15 | NA |
| 837 | 198.86 | atmosphere | 1005 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 841 | 198.87 | atmosphere | 1015 | 30 | < th | dose independent | rect. | 16 | 16 |
| 865 | 198.91 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 12 |
| 881 | 198.94 | wind | 9 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 886 | 198.95 | wind | 9 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 900 | 198.97 | humidity | 80 | 30 | < th | dose independent | rect. | 20 | 20 |
| 926 | 199.02 | radiation | 30 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 932 | 199.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 13 |
| 997 | 199.13 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 1 |