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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0277900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0141) R2 : 0.00685
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0526 (0.0297) R2dN8 : 0.00885 R2N8 : 0.00685
σ : 0.265
deviance : 32.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.05 0.262 2.92 -0.0108 0.0288 -0.147 -0.0404 0.955 0.0489 10.8 1.1 11 -- --
31.73 0.264 2.91 0.00156 0.0337 -0.0947 0.198 -- 0.0669 15.3 1.7 14 -- --
30.92 0.261 2.92 -0.0182 0.0337 -0.155 -- 0.823 0.0531 11.9 1.1 11 -- --
31.7 0.262 2.91 0.0112 0.048 -0.109 -- -- 0.0698 13.9 1.895 23 -- --
30.99 0.261 2.92 -0.0181 -- -0.148 -- 0.819 0.0525 -- 1.1 11 -- --
32.12 0.266 2.91 0.0423 0.0389 -- -0.187 -- 0.0557 5.94 -- -- -- --
32.19 0.266 2.91 0.0413 0.0413 -- -- -- 0.0566 7.49 -- -- -- --
31.8 0.263 2.91 0.00555 -- -0.0938 -- -- 0.0661 -- 1.8 23 -- --
31.7 0.262 2.91 -- 0.0463 -0.113 -- -- 0.0694 13.7 1.9 23 -- --
32.28 0.265 2.91 0.0419 -- -- -- -- 0.0573 -- -- -- -- --
32.24 0.266 2.91 -- 0.0417 -- -- -- 0.052 7.43 -- -- -- --
31.8 0.263 2.91 -- -- -0.0954 -- -- 0.0637 -- 1.772 23 -- --
32.33 0.265 2.91 -- -- -- -- -- 0.0526 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.51 wind 3.0 30 < th dose dependent rect. 1 2
2 29.53 wind 1.0 30 < th dose independent rect. 10 1
3 29.53 temperature 10.0 1440 > th dose independent rect. 11 1
7 29.53 atmosphere 995.0 1440 > th dose independent rect. 11 1
10 29.53 precipitation 0.1 1440 < th dose independent rect. 11 1
11 29.53 temperature 10.0 1440 > th dose independent rect. 12 23
14 29.53 wind 1.0 30 < th dose dependent rect. 10 1
15 29.53 precipitation 0.1 1440 < th dose dependent rect. 11 1
17 29.60 humidity 70.0 30 < th dose independent rect. 10 1
18 29.61 temperature 25.0 30 > th dose dependent rect. 10 1
19 29.63 wind 1.0 30 < th dose independent rect. 1 2
22 29.64 atmosphere 1005.0 30 > th dose independent rect. 10 1
23 29.64 atmosphere 1010.0 30 < th dose independent rect. 10 1
24 29.64 radiation 40.0 30 < th dose independent rect. 10 1
26 29.64 atmosphere 1000.0 30 > th dose dependent rect. 10 1
27 29.65 radiation 20.0 30 > th dose independent rect. 10 1
31 29.66 temperature 25.0 30 > th dose independent rect. 10 1
33 29.66 humidity 80.0 30 < th dose dependent rect. 10 1
35 29.67 temperature 30.0 30 < th dose independent rect. 10 1
39 29.68 wind 5.0 30 < th dose dependent rect. 10 1
47 29.69 humidity 60.0 30 > th dose independent rect. 10 1
49 29.70 temperature 10.0 30 > th dose independent rect. 10 1
56 29.70 precipitation 0.1 30 < th dose independent rect. 10 1
57 29.70 temperature 10.0 30 > th dose independent rect. 11 23
59 29.70 precipitation 0.1 30 < th dose dependent rect. 10 1
60 29.71 wind 1.0 30 > th dose independent rect. 10 1
64 29.75 radiation 1.0 30 > th dose dependent rect. 10 1
67 29.79 radiation 40.0 30 < th dose dependent rect. 10 1
68 29.80 humidity 90.0 30 > th dose independent rect. 2 1
69 29.80 humidity 80.0 30 > th dose dependent rect. 2 1
71 29.81 wind 9.0 4320 < th dose independent rect. 3 1
72 29.81 temperature 20.0 30 > th dose independent rect. 2 1
73 29.81 atmosphere 1000.0 30 > th dose independent rect. 2 1
90 29.82 temperature 10.0 30 > th dose dependent rect. 2 1
93 29.82 humidity 50.0 30 > th dose dependent rect. 2 1
98 29.83 temperature 10.0 30 > th dose independent rect. 2 1
100 29.83 temperature 30.0 30 < th dose independent rect. 2 1
101 29.83 humidity 50.0 30 > th dose independent rect. 2 1
106 29.83 atmosphere 1010.0 30 < th dose independent rect. 2 1
108 29.83 radiation 1.0 30 < th dose independent rect. 2 1
113 29.83 precipitation 0.1 30 < th dose independent rect. 2 1
114 29.83 temperature 10.0 30 > th dose independent rect. 3 23
117 29.83 atmosphere 995.0 30 > th dose dependent rect. 2 1
118 29.83 radiation 1.0 30 < th dose dependent rect. 2 1
123 29.83 precipitation 0.1 30 < th dose dependent rect. 2 1
134 29.85 atmosphere 1015.0 30 < th dose dependent rect. 2 1
139 29.87 humidity 50.0 30 > th dose dependent rect. 10 1
143 29.88 atmosphere 1015.0 30 < th dose dependent rect. 10 1
146 29.90 temperature 30.0 30 < th dose dependent rect. 2 1
158 29.95 wind 1.0 30 > th dose dependent rect. 10 1
190 30.03 wind 1.0 30 > th dose independent rect. 2 1
197 30.08 wind 1.0 10 > th dose independent rect. 11 23
225 30.16 wind 1.0 10 < th dose independent rect. 6 21
229 30.18 temperature 10.0 1440 > th dose independent rect. 3 1
232 30.18 temperature 30.0 1440 < th dose independent rect. 3 1
236 30.18 humidity 50.0 1440 > th dose independent rect. 3 1
245 30.18 atmosphere 995.0 1440 > th dose independent rect. 3 1
246 30.18 radiation 1.0 1440 < th dose independent rect. 3 1
266 30.18 temperature 10.0 1440 > th dose independent rect. 4 23
270 30.18 radiation 1.0 1440 < th dose dependent rect. 3 1
291 30.20 atmosphere 1000.0 10 > th dose independent rect. 3 23
295 30.21 wind 9.0 30 < th dose independent rect. 11 23
352 30.34 precipitation 0.1 30 < th dose independent rect. 3 23
354 30.34 precipitation 0.1 30 < th dose dependent rect. 3 23
356 30.37 wind 9.0 30 < th dose independent rect. 3 23
400 30.53 wind 3.0 10 < th dose dependent rect. 22 5
403 30.55 wind 1.0 10 > th dose independent sin 17 NA
417 30.58 wind 3.0 10 < th dose dependent rect. 10 17
468 30.63 wind 1.0 10 < th dose independent sin 17 NA
477 30.65 wind 9.0 4320 < th dose independent rect. 4 4
487 30.68 wind 1.0 4320 < th dose independent rect. 15 2
493 30.69 wind 1.0 720 < th dose dependent rect. 15 2
494 30.69 wind 1.0 4320 < th dose dependent rect. 15 2
508 30.74 wind 1.0 10 > th dose independent rect. 21 23
509 30.74 wind 1.0 43200 < th dose dependent rect. 15 6
515 30.76 wind 1.0 4320 > th dose independent rect. 15 2
520 30.77 wind 1.0 720 < th dose independent rect. 15 2
522 30.77 precipitation 0.1 30 < th dose independent rect. 11 23
525 30.77 precipitation 0.1 30 < th dose dependent rect. 11 23
530 30.78 temperature 25.0 10 < th dose independent rect. 24 3
538 30.78 wind 3.0 10 < th dose dependent rect. 16 11
592 30.84 wind 1.0 43200 > th dose independent rect. 17 1
606 30.86 wind 1.0 43200 < th dose independent rect. 16 5
682 30.88 atmosphere 995.0 30 > th dose independent rect. 11 23
705 30.88 wind 1.0 43200 < th dose dependent rect. 15 3
714 30.90 wind 9.0 4320 > th dose independent rect. 3 1
764 30.90 wind 9.0 4320 > th dose dependent rect. 3 1
819 30.91 humidity 50.0 90 > th dose independent rect. 3 22
824 30.91 wind 7.0 90 < th dose dependent rect. 19 8
825 30.91 wind 3.0 10 < th dose dependent rect. 7 20
828 30.92 wind 1.0 43200 > th dose independent rect. 16 5
866 30.94 radiation 1.0 14400 < th dose dependent rect. 20 8
892 30.96 radiation 1.0 4320 < th dose dependent rect. 21 1
893 30.96 radiation 1.0 43200 < th dose dependent rect. 21 1
899 30.96 wind 3.0 30 < th dose dependent rect. 1 10
943 30.99 wind 1.0 30 > th dose independent rect. 3 23
967 31.00 wind 1.0 1440 < th dose dependent rect. 19 1
982 31.01 radiation 10.0 30 < th dose independent rect. 3 22
994 31.02 wind 1.0 1440 < th dose independent rect. 19 1