Os12g0276100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0276100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.33 | 0.279 | 11.4 | 0.119 | 0.474 | 0.625 | -0.117 | -0.348 | -0.387 | 23.5 | 27.2 | 245 | -- | -- |
| 35.43 | 0.277 | 11.4 | 0.183 | 0.458 | 0.605 | -0.0954 | -- | -0.373 | 23.5 | 27.1 | 259 | -- | -- |
| 35.32 | 0.277 | 11.4 | 0.14 | 0.466 | 0.636 | -- | -0.278 | -0.389 | 23.6 | 27.1 | 256 | -- | -- |
| 35.45 | 0.277 | 11.4 | 0.19 | 0.456 | 0.621 | -- | -- | -0.372 | 23.6 | 27.1 | 270 | -- | -- |
| 40.94 | 0.298 | 11.4 | 0.125 | -- | 0.713 | -- | -0.0727 | -0.474 | -- | 26 | 584 | -- | -- |
| 50.2 | 0.332 | 11.4 | 0.346 | 0.549 | -- | -0.186 | -- | -0.257 | 20.1 | -- | -- | -- | -- |
| 50.31 | 0.332 | 11.4 | 0.351 | 0.549 | -- | -- | -- | -0.257 | 20.1 | -- | -- | -- | -- |
| 40.96 | 0.298 | 11.4 | 0.139 | -- | 0.709 | -- | -- | -0.471 | -- | 26 | 584 | -- | -- |
| 36.32 | 0.281 | 11.4 | -- | 0.466 | 0.649 | -- | -- | -0.397 | 23.8 | 27.09 | 270 | -- | -- |
| 66.82 | 0.382 | 11.4 | 0.346 | -- | -- | -- | -- | -0.264 | -- | -- | -- | -- | -- |
| 53.55 | 0.342 | 11.4 | -- | 0.547 | -- | -- | -- | -0.296 | 20.1 | -- | -- | -- | -- |
| 41.44 | 0.3 | 11.4 | -- | -- | 0.729 | -- | -- | -0.492 | -- | 25.96 | 585 | -- | -- |
| 69.98 | 0.39 | 11.4 | -- | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.77 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 3 | 33.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 14 | 34.60 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 15 | 34.69 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 36 | 35.03 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 54 | 35.33 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 61 | 35.47 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 74 | 35.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 79 | 35.63 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 81 | 35.64 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 11 |
| 84 | 35.66 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 90 | 35.70 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 15 |
| 105 | 35.73 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 113 | 35.78 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 13 |
| 114 | 35.78 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 124 | 35.83 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 128 | 35.84 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 138 | 35.86 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 140 | 35.87 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 144 | 35.89 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 181 | 35.98 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 15 |
| 186 | 36.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 11 |
| 191 | 36.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 195 | 36.02 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 287 | 36.22 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 438 | 36.56 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 16 |
| 581 | 36.85 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 610 | 36.90 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 10 |
| 682 | 37.06 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 742 | 37.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 823 | 37.28 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 17 |
| 893 | 37.38 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 929 | 37.45 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 19 |
| 978 | 37.56 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 7 |
| 988 | 37.59 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |