Os12g0275400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os12g0275400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.39 | 0.255 | 9.99 | 1.43 | 0.717 | -0.419 | -0.25 | 7.15 | 0.0725 | 20.4 | 30 | 2593 | -- | -- |
| 32.48 | 0.265 | 10.2 | 0.023 | 0.699 | 0.499 | -0.158 | -- | -0.289 | 20.6 | 32.3 | 18380 | -- | -- |
| 29.59 | 0.253 | 10 | 1.42 | 0.717 | -0.414 | -- | 7.09 | 0.0724 | 20.4 | 30 | 2598 | -- | -- |
| 32.6 | 0.266 | 10.2 | 0.0191 | 0.704 | 0.501 | -- | -- | -0.29 | 20.5 | 32.3 | 18382 | -- | -- |
| 55.39 | 0.347 | 10 | 1.13 | -- | -0.232 | -- | 7.34 | 0.0398 | -- | 30.39 | 2198 | -- | -- |
| 39.8 | 0.296 | 10.2 | 0.208 | 0.711 | -- | -0.18 | -- | -0.0535 | 20.6 | -- | -- | -- | -- |
| 39.91 | 0.296 | 10.2 | 0.214 | 0.712 | -- | -- | -- | -0.0535 | 20.6 | -- | -- | -- | -- |
| 58.63 | 0.357 | 10.2 | 0.125 | -- | 0.557 | -- | -- | -0.106 | -- | 28.6 | 5099 | -- | -- |
| 32.61 | 0.266 | 10.2 | -- | 0.703 | 0.504 | -- | -- | -0.289 | 20.5 | 32.3 | 18382 | -- | -- |
| 68.47 | 0.387 | 10.1 | 0.212 | -- | -- | -- | -- | -0.0596 | -- | -- | -- | -- | -- |
| 41.12 | 0.3 | 10.2 | -- | 0.711 | -- | -- | -- | -0.0774 | 20.7 | -- | -- | -- | -- |
| 58.44 | 0.356 | 10.2 | -- | -- | 0.54 | -- | -- | -0.11 | -- | 28.59 | 5102 | -- | -- |
| 69.66 | 0.39 | 10.2 | -- | -- | -- | -- | -- | -0.0832 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.66 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 15 |
| 8 | 29.69 | temperature | 10 | 4320 | > th | dose dependent | sin | 19 | NA |
| 15 | 29.70 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 10 |
| 109 | 29.80 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 188 | 29.85 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 216 | 29.86 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 217 | 29.86 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 240 | 29.87 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 23 |
| 255 | 29.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 266 | 29.90 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 296 | 29.92 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 497 | 30.04 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 517 | 30.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 518 | 30.06 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 546 | 30.07 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 20 |
| 551 | 30.08 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 553 | 30.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 556 | 30.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 584 | 30.09 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 18 |
| 593 | 30.10 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 621 | 30.11 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 10 |
| 637 | 30.12 | temperature | 30 | 4320 | < th | dose dependent | sin | 17 | NA |
| 790 | 30.16 | temperature | 30 | 4320 | < th | dose dependent | rect. | 16 | 22 |
| 846 | 30.18 | temperature | 30 | 4320 | < th | dose dependent | rect. | 13 | 22 |
| 854 | 30.19 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 953 | 30.22 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 23 |