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Os12g0274700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.8 (0.0332) R2 : 0.178
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.696 (0.0699) R2dN8 : 0.23 R2N8 : 0.178
σ : 0.625
deviance : 179.46
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
157.39 0.589 16.8 -0.554 0.412 -0.296 0.249 -1.29 -0.749 0.235 20.9 412 -- --
162.94 0.595 16.8 -0.256 0.436 -0.211 0.322 -- -0.676 0.431 21.4 511 -- --
157.64 0.585 16.8 -0.559 0.407 -0.297 -- -1.28 -0.748 0.151 21 398 -- --
163.29 0.595 16.8 -0.258 0.438 -0.227 -- -- -0.674 0.257 21.48 540 -- --
167.29 0.602 16.8 -0.497 -- -0.32 -- -1.22 -0.737 -- 21 281 -- --
164.82 0.602 16.8 -0.324 0.426 -- 0.39 -- -0.737 0.948 -- -- -- --
165.39 0.602 16.8 -0.338 0.425 -- -- -- -0.739 0.614 -- -- -- --
170.89 0.609 16.8 -0.299 -- -0.213 -- -- -0.639 -- 24.4 93 -- --
164.89 0.598 16.8 -- 0.454 -0.288 -- -- -0.629 0.196 21.51 659 -- --
176.72 0.621 16.8 -0.323 -- -- -- -- -0.731 -- -- -- -- --
168.39 0.607 16.8 -- 0.42 -- -- -- -0.701 0.575 -- -- -- --
168.5 0.605 16.8 -- -- -0.358 -- -- -0.661 -- 27.1 51 -- --
179.46 0.625 16.8 -- -- -- -- -- -0.696 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 152.48 atmosphere 995.0 14400 > th dose independent rect. 18 2
3 153.65 humidity 50.0 30 > th dose independent rect. 19 23
4 153.75 temperature 25.0 90 > th dose dependent rect. 17 11
9 153.91 radiation 1.0 14400 < th dose dependent rect. 20 5
11 154.06 temperature 25.0 90 > th dose dependent rect. 17 2
13 154.16 temperature 25.0 30 > th dose independent rect. 17 2
14 154.17 radiation 1.0 14400 < th dose dependent rect. 22 2
16 154.39 radiation 1.0 14400 < th dose dependent rect. 19 7
17 154.43 radiation 1.0 14400 < th dose dependent rect. 19 1
19 154.53 radiation 1.0 14400 < th dose dependent rect. 19 9
21 154.56 wind 7.0 14400 > th dose independent rect. 6 1
22 154.58 wind 9.0 4320 < th dose independent rect. 18 10
31 154.72 wind 9.0 4320 > th dose dependent rect. 18 11
36 154.80 wind 9.0 4320 < th dose independent rect. 20 8
39 154.81 precipitation 0.1 10 < th dose independent rect. 19 23
40 154.81 precipitation 0.1 10 < th dose dependent rect. 19 23
43 154.85 atmosphere 1005.0 14400 > th dose independent rect. 11 1
47 154.89 wind 7.0 14400 < th dose independent rect. 6 1
56 155.02 atmosphere 995.0 14400 > th dose independent rect. 16 1
57 155.02 atmosphere 1005.0 90 > th dose independent rect. 18 1
61 155.08 wind 9.0 4320 > th dose independent rect. 18 11
63 155.11 atmosphere 995.0 14400 > th dose independent rect. 12 8
68 155.13 wind 9.0 4320 < th dose independent rect. 18 7
69 155.14 humidity 50.0 30 > th dose dependent rect. 18 1
72 155.15 wind 9.0 30 < th dose independent rect. 19 23
73 155.15 wind 5.0 10 < th dose dependent rect. 18 1
75 155.15 wind 9.0 4320 > th dose dependent rect. 20 9
78 155.16 atmosphere 1000.0 30 > th dose dependent rect. 18 1
82 155.20 atmosphere 995.0 14400 > th dose independent rect. 9 11
89 155.23 radiation 10.0 30 < th dose dependent rect. 18 1
91 155.24 atmosphere 995.0 14400 > th dose independent rect. 8 6
94 155.25 radiation 10.0 30 < th dose independent rect. 18 1
95 155.25 atmosphere 995.0 14400 < th dose independent rect. 15 4
103 155.26 wind 9.0 4320 < th dose independent rect. 18 5
115 155.28 wind 9.0 30 < th dose independent rect. 18 1
118 155.29 wind 1.0 30 > th dose independent rect. 18 1
120 155.29 temperature 10.0 30 > th dose independent rect. 18 1
122 155.29 humidity 50.0 30 > th dose independent rect. 18 1
123 155.29 atmosphere 1010.0 30 < th dose independent rect. 18 1
128 155.29 precipitation 0.1 30 < th dose independent rect. 18 1
130 155.29 temperature 10.0 30 > th dose independent rect. 19 23
131 155.29 precipitation 0.1 30 < th dose dependent rect. 18 1
137 155.30 wind 1.0 30 > th dose dependent rect. 18 1
141 155.31 humidity 90.0 30 < th dose independent rect. 18 1
142 155.31 atmosphere 995.0 14400 < th dose independent rect. 16 1
152 155.34 wind 9.0 4320 < th dose independent rect. 18 3
153 155.34 atmosphere 995.0 14400 < th dose dependent rect. 16 1
158 155.35 wind 9.0 4320 < th dose independent rect. 20 5
161 155.35 atmosphere 995.0 14400 < th dose dependent rect. 16 3
164 155.36 atmosphere 1005.0 14400 < th dose independent rect. 11 1
200 155.38 temperature 10.0 30 > th dose dependent rect. 18 1
202 155.38 atmosphere 1015.0 30 < th dose dependent rect. 18 1
246 155.45 wind 9.0 4320 > th dose dependent rect. 17 18
247 155.46 wind 9.0 4320 > th dose independent rect. 18 3
249 155.46 wind 9.0 4320 > th dose dependent rect. 18 3
252 155.46 temperature 25.0 90 > th dose dependent rect. 17 16
255 155.47 wind 9.0 4320 > th dose dependent sin 11 NA
269 155.50 wind 9.0 4320 < th dose independent rect. 20 3
287 155.52 wind 9.0 4320 > th dose independent rect. 20 8
298 155.55 temperature 20.0 720 > th dose independent rect. 12 10
341 155.59 atmosphere 995.0 30 > th dose independent rect. 19 23
343 155.59 temperature 10.0 270 > th dose dependent rect. 19 12
368 155.63 wind 9.0 4320 < th dose independent rect. 20 1
376 155.66 atmosphere 995.0 14400 > th dose independent rect. 10 4
392 155.72 humidity 90.0 30 < th dose dependent rect. 18 1
396 155.74 wind 9.0 4320 > th dose dependent rect. 18 16
400 155.78 wind 9.0 4320 > th dose independent rect. 17 17
403 155.79 temperature 10.0 1440 > th dose independent rect. 19 1
406 155.79 temperature 30.0 1440 < th dose independent rect. 19 1
411 155.79 humidity 50.0 1440 > th dose independent rect. 19 1
413 155.79 atmosphere 995.0 1440 > th dose independent rect. 19 1
417 155.79 radiation 1.0 1440 < th dose independent rect. 19 1
437 155.79 temperature 10.0 1440 > th dose independent rect. 20 23
440 155.79 radiation 1.0 1440 < th dose dependent rect. 19 1
455 155.81 wind 9.0 4320 > th dose dependent rect. 20 1
468 155.84 wind 9.0 4320 < th dose independent rect. 17 17
470 155.85 wind 9.0 4320 > th dose independent rect. 20 1
492 155.89 atmosphere 995.0 14400 > th dose independent rect. 12 1
518 155.94 humidity 80.0 720 > th dose independent rect. 5 2
544 156.01 temperature 30.0 30 < th dose independent rect. 18 1
547 156.01 temperature 25.0 90 > th dose independent rect. 3 14
582 156.08 wind 9.0 4320 < th dose independent sin 12 NA
584 156.08 wind 7.0 14400 > th dose dependent rect. 6 1
598 156.13 radiation 20.0 720 < th dose independent rect. 19 12
627 156.21 wind 9.0 4320 > th dose dependent rect. 20 14
645 156.27 wind 9.0 4320 > th dose independent sin 12 NA
648 156.27 temperature 20.0 10 > th dose dependent rect. 6 11
660 156.30 temperature 10.0 30 > th dose dependent rect. 19 23
664 156.32 temperature 10.0 720 > th dose independent rect. 7 12
665 156.32 temperature 10.0 720 > th dose independent rect. 19 12
666 156.32 temperature 30.0 720 < th dose independent rect. 19 12
667 156.32 humidity 50.0 720 > th dose independent rect. 19 12
668 156.32 atmosphere 995.0 720 > th dose independent rect. 19 12
669 156.32 atmosphere 1015.0 720 < th dose independent rect. 7 12
685 156.34 temperature 30.0 30 < th dose dependent rect. 18 1
705 156.38 wind 9.0 720 < th dose independent rect. 19 12
709 156.38 temperature 15.0 90 > th dose dependent rect. 5 12
722 156.41 atmosphere 995.0 720 > th dose independent rect. 17 2
750 156.46 temperature 20.0 720 > th dose independent rect. 19 3
777 156.52 atmosphere 1005.0 14400 > th dose independent rect. 8 1
793 156.58 atmosphere 1005.0 14400 < th dose independent rect. 8 6
794 156.58 atmosphere 1000.0 90 > th dose independent rect. 17 12
795 156.59 temperature 30.0 270 < th dose dependent rect. 23 12
798 156.61 wind 9.0 4320 < th dose independent rect. 20 14
799 156.61 temperature 20.0 720 > th dose independent rect. 10 14
800 156.61 temperature 10.0 720 > th dose dependent rect. 4 3
812 156.64 atmosphere 1000.0 10 > th dose independent rect. 18 12
817 156.65 temperature 20.0 270 > th dose independent rect. 3 21
821 156.66 atmosphere 1005.0 14400 < th dose independent rect. 8 1
834 156.68 atmosphere 995.0 720 > th dose independent rect. 7 12
858 156.73 temperature 30.0 720 < th dose dependent rect. 24 1
860 156.73 humidity 60.0 720 > th dose dependent rect. 5 2
872 156.74 temperature 30.0 720 < th dose dependent rect. 23 4
875 156.75 wind 1.0 30 > th dose independent rect. 19 23
885 156.77 wind 7.0 14400 > th dose dependent rect. 10 1
901 156.80 temperature 20.0 10 > th dose dependent rect. 3 14
920 156.83 temperature 15.0 270 > th dose dependent rect. 3 11
937 156.85 atmosphere 995.0 10 > th dose dependent rect. 18 12
960 156.88 temperature 20.0 10 > th dose dependent rect. 1 16
970 156.90 humidity 50.0 720 > th dose dependent rect. 3 4
971 156.91 atmosphere 1005.0 14400 > th dose independent sin 2 NA
988 156.94 wind 1.0 720 > th dose independent rect. 7 12