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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0274200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipolytic enzyme, G-D-S-L family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0274) R2 : 0.00359
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.074 (0.0577) R2dN8 : 0.00464 R2N8 : 0.00359
σ : 0.516
deviance : 122.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.73 0.499 2.96 -0.345 0.171 0.226 -0.163 -0.394 -0.212 9.22 1005 522 -- --
113.46 0.496 2.96 -0.338 0.168 0.221 -0.187 -- -0.198 9.33 1005 522 -- --
112.82 0.495 2.96 -0.35 0.171 0.227 -- -0.407 -0.212 9.39 1005 522 -- --
113.6 0.496 2.96 -0.345 0.169 0.218 -- -- -0.198 9.48 1005 522 -- --
114.32 0.498 2.97 -0.348 -- 0.239 -- -0.394 -0.224 -- 1006 376 -- --
116.76 0.507 2.94 -0.339 0.195 -- -0.179 -- -0.113 9.18 -- -- -- --
116.87 0.506 2.94 -0.345 0.196 -- -- -- -0.113 9.26 -- -- -- --
115.11 0.5 2.97 -0.345 -- 0.231 -- -- -0.21 -- 1006 401 -- --
116.67 0.503 2.96 -- 0.172 0.219 -- -- -0.175 9.96 1006 443 -- --
119.1 0.51 2.95 -0.346 -- -- -- -- -0.112 -- -- -- -- --
120.01 0.512 2.93 -- 0.196 -- -- -- -0.0748 9.39 -- -- -- --
118.24 0.506 2.96 -- -- 0.232 -- -- -0.172 -- 1006 401 -- --
122.26 0.516 2.94 -- -- -- -- -- -0.074 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 104.33 radiation 20.0 90 < th dose independent rect. 10 2
2 104.34 radiation 20.0 90 < th dose dependent rect. 10 2
15 106.07 wind 9.0 10 > th dose independent rect. 13 1
28 106.07 wind 9.0 10 > th dose dependent rect. 13 1
66 107.55 radiation 30.0 10 > th dose independent rect. 13 1
71 107.61 radiation 1.0 10 < th dose dependent rect. 6 1
113 108.76 atmosphere 1005.0 10 > th dose dependent rect. 1 1
125 108.94 radiation 20.0 10 > th dose dependent rect. 13 1
144 109.27 humidity 90.0 10 < th dose independent rect. 1 1
146 109.31 radiation 30.0 30 < th dose independent rect. 24 13
156 109.53 humidity 90.0 10 < th dose independent rect. 24 6
157 109.57 radiation 1.0 10 < th dose independent rect. 6 6
160 109.59 radiation 1.0 10 < th dose independent rect. 6 1
184 109.85 atmosphere 1005.0 90 > th dose independent rect. 24 14
186 109.86 radiation 40.0 10 < th dose independent rect. 13 11
187 109.86 radiation 40.0 720 < th dose independent rect. 24 12
189 109.89 atmosphere 1005.0 270 > th dose independent rect. 10 2
195 109.96 radiation 20.0 90 < th dose independent rect. 10 20
207 110.09 radiation 40.0 270 < th dose independent rect. 22 14
216 110.19 humidity 90.0 90 < th dose dependent rect. 24 2
242 110.42 atmosphere 1005.0 30 > th dose independent rect. 11 1
254 110.51 atmosphere 1005.0 30 > th dose independent rect. 11 3
260 110.56 radiation 1.0 10 < th dose dependent rect. 6 6
268 110.62 radiation 40.0 90 < th dose dependent rect. 24 12
272 110.64 atmosphere 1005.0 30 > th dose independent rect. 24 6
286 110.72 radiation 20.0 90 < th dose independent rect. 10 16
294 110.78 humidity 50.0 10 > th dose independent rect. 24 14
296 110.82 radiation 20.0 270 < th dose independent rect. 21 15
303 110.90 humidity 60.0 720 > th dose independent rect. 24 12
325 110.92 radiation 40.0 90 < th dose dependent rect. 10 20
326 110.93 humidity 80.0 720 > th dose independent rect. 21 3
331 110.97 atmosphere 1005.0 90 > th dose independent rect. 10 20
336 110.99 radiation 40.0 720 < th dose dependent rect. 24 12
338 111.00 radiation 40.0 720 < th dose independent rect. 17 19
355 111.16 atmosphere 1005.0 90 > th dose independent rect. 24 2
358 111.16 radiation 20.0 90 < th dose independent rect. 19 17
366 111.18 radiation 40.0 270 < th dose dependent rect. 21 15
377 111.24 atmosphere 1005.0 10 > th dose independent rect. 1 1
388 111.28 wind 1.0 90 > th dose dependent rect. 24 1
390 111.30 radiation 1.0 90 > th dose independent rect. 4 1
402 111.30 radiation 1.0 90 > th dose dependent rect. 4 1
412 111.31 humidity 60.0 30 > th dose independent rect. 11 1
413 111.31 radiation 40.0 270 < th dose independent rect. 8 21
418 111.33 wind 3.0 720 > th dose independent rect. 24 2
432 111.37 wind 3.0 90 > th dose independent rect. 24 1
444 111.43 humidity 60.0 720 > th dose independent rect. 9 3
454 111.47 humidity 60.0 10 > th dose independent rect. 11 3
456 111.47 humidity 50.0 90 > th dose dependent rect. 11 1
460 111.49 atmosphere 1005.0 720 > th dose independent rect. 24 1
461 111.49 atmosphere 1005.0 270 > th dose independent rect. 22 14
491 111.51 humidity 60.0 720 > th dose dependent rect. 21 3
497 111.52 radiation 40.0 270 < th dose dependent rect. 8 21
498 111.53 humidity 60.0 90 > th dose independent rect. 10 4
506 111.55 wind 1.0 30 > th dose independent rect. 24 14
507 111.55 wind 1.0 720 > th dose dependent rect. 24 1
516 111.59 atmosphere 1010.0 30 < th dose independent rect. 11 3
520 111.59 wind 1.0 720 > th dose dependent rect. 18 3
524 111.60 atmosphere 1010.0 30 < th dose independent rect. 11 15
527 111.61 radiation 40.0 90 < th dose independent rect. 10 16
575 111.69 wind 7.0 30 < th dose independent rect. 12 23
578 111.70 temperature 10.0 1440 > th dose independent rect. 15 10
581 111.70 temperature 10.0 1440 > th dose independent rect. 1 14
585 111.70 atmosphere 1005.0 270 > th dose independent rect. 8 21
588 111.71 humidity 60.0 90 > th dose independent rect. 10 20
593 111.73 wind 3.0 720 > th dose independent rect. 17 9
602 111.74 atmosphere 1015.0 30 < th dose independent rect. 24 14
603 111.75 temperature 10.0 30 > th dose independent rect. 14 10
604 111.75 temperature 10.0 30 > th dose independent rect. 24 14
608 111.76 wind 7.0 30 < th dose independent rect. 14 10
609 111.76 precipitation 0.1 30 < th dose independent rect. 14 10
610 111.76 precipitation 0.1 30 < th dose independent rect. 24 14
614 111.76 precipitation 0.1 30 < th dose dependent rect. 14 10
615 111.76 precipitation 0.1 30 < th dose dependent rect. 24 14
628 111.80 atmosphere 995.0 30 > th dose independent rect. 14 10
673 111.88 radiation 40.0 10 < th dose dependent rect. 13 11
676 111.89 wind 3.0 90 > th dose independent rect. 24 6
679 111.90 wind 3.0 720 > th dose independent rect. 18 3
683 111.90 wind 9.0 90 < th dose independent rect. 24 14
687 111.90 humidity 90.0 10 < th dose independent rect. 11 19
688 111.90 atmosphere 1005.0 30 > th dose independent rect. 24 23
696 111.92 temperature 20.0 30 > th dose independent rect. 11 3
698 111.92 atmosphere 1010.0 90 < th dose independent rect. 10 20
699 111.92 atmosphere 1000.0 30 > th dose dependent rect. 24 6
704 111.93 radiation 40.0 90 < th dose dependent rect. 10 16
705 111.94 wind 3.0 720 > th dose independent rect. 10 16
717 111.96 wind 9.0 720 < th dose dependent rect. 20 4
718 111.96 atmosphere 995.0 30 > th dose dependent rect. 24 14
729 111.99 wind 1.0 10 > th dose independent rect. 14 10
733 111.99 radiation 30.0 90 < th dose dependent rect. 19 17
740 112.01 precipitation 0.1 1440 > th dose independent rect. 10 3
743 112.01 precipitation 0.1 1440 > th dose dependent rect. 10 3
749 112.03 precipitation 0.1 1440 > th dose independent rect. 12 1
752 112.03 radiation 40.0 270 < th dose independent rect. 9 18
753 112.03 humidity 60.0 10 > th dose independent rect. 11 19
754 112.03 precipitation 0.1 1440 > th dose dependent rect. 12 1
757 112.04 temperature 30.0 4320 > th dose independent rect. 12 1
806 112.10 humidity 60.0 720 > th dose independent rect. 18 18
820 112.12 radiation 30.0 43200 < th dose independent rect. 17 8
838 112.14 wind 1.0 10 < th dose dependent rect. 6 1
851 112.16 wind 3.0 30 > th dose independent rect. 11 3
854 112.16 humidity 50.0 30 > th dose independent rect. 14 10
866 112.18 temperature 30.0 4320 < th dose independent rect. 12 1
879 112.19 wind 1.0 270 > th dose independent rect. 8 22
880 112.19 humidity 90.0 720 < th dose dependent rect. 24 1
881 112.20 wind 9.0 43200 < th dose independent rect. 1 1
900 112.22 atmosphere 1010.0 30 < th dose independent rect. 11 1
918 112.25 wind 1.0 1440 > th dose independent rect. 17 1
919 112.25 humidity 80.0 1440 < th dose independent rect. 23 3
938 112.27 atmosphere 1005.0 720 > th dose independent rect. 18 18
941 112.28 wind 3.0 10 > th dose independent rect. 1 6
947 112.29 wind 7.0 30 < th dose independent rect. 12 12
949 112.29 wind 3.0 720 < th dose independent rect. 12 14
955 112.29 humidity 80.0 1440 < th dose dependent rect. 23 3
963 112.30 radiation 40.0 720 < th dose dependent rect. 17 19
971 112.32 humidity 90.0 10 < th dose independent rect. 24 14
992 112.33 atmosphere 995.0 30 > th dose dependent rect. 11 3