Os12g0272800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os12g0272800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 226.12 | 0.707 | 3.99 | 0.314 | 0.19 | -1.88 | 0.495 | -1.35 | -0.348 | 22.8 | 25.8 | 3965 | -- | -- |
| 227.93 | 0.703 | 4.04 | 0.0548 | 0.188 | -1.7 | 0.552 | -- | -0.4 | 22.6 | 26.59 | 3925 | -- | -- |
| 227.1 | 0.702 | 3.99 | 0.311 | 0.188 | -1.9 | -- | -1.44 | -0.346 | 22.8 | 25.7 | 3922 | -- | -- |
| 229.15 | 0.705 | 4.04 | 0.0374 | 0.186 | -1.71 | -- | -- | -0.403 | 23.2 | 26.57 | 3923 | -- | -- |
| 229.02 | 0.705 | 3.99 | 0.302 | -- | -1.93 | -- | -1.44 | -0.356 | -- | 25.9 | 3866 | -- | -- |
| 277.09 | 0.78 | 3.94 | 0.877 | 0.3 | -- | 0.531 | -- | 0.0275 | 23.7 | -- | -- | -- | -- |
| 278.27 | 0.781 | 3.94 | 0.854 | 0.299 | -- | -- | -- | 0.0246 | 0.0265 | -- | -- | -- | -- |
| 231.14 | 0.708 | 4.03 | 0.0397 | -- | -1.72 | -- | -- | -0.397 | -- | 27.63 | 3889 | -- | -- |
| 229.18 | 0.705 | 4.04 | -- | 0.185 | -1.72 | -- | -- | -0.409 | 23.3 | 26.54 | 3923 | -- | -- |
| 283.88 | 0.787 | 3.93 | 0.864 | -- | -- | -- | -- | 0.0288 | -- | -- | -- | -- | -- |
| 297.5 | 0.807 | 3.96 | -- | 0.31 | -- | -- | -- | -0.0706 | 0.182 | -- | -- | -- | -- |
| 231.15 | 0.708 | 4.03 | -- | -- | -1.76 | -- | -- | -0.415 | -- | 26.84 | 3864 | -- | -- |
| 303.55 | 0.813 | 3.96 | -- | -- | -- | -- | -- | -0.0671 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 221.83 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 2 | 221.92 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 4 | 222.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 5 | 222.55 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 14 | 223.03 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 6 |
| 16 | 223.05 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 6 |
| 171 | 224.23 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 202 | 224.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 240 | 224.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 291 | 224.85 | temperature | 30 | 4320 | < th | dose dependent | sin | 11 | NA |
| 323 | 225.00 | temperature | 10 | 4320 | > th | dose dependent | sin | 10 | NA |
| 334 | 225.07 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 417 | 225.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 450 | 225.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 8 |
| 457 | 225.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 8 |
| 484 | 225.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 586 | 226.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 5 |
| 605 | 226.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 636 | 226.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 649 | 226.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 776 | 226.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 825 | 226.76 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 890 | 226.90 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 939 | 226.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |