Os12g0272500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os12g0272500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.12 | 0.583 | 3.34 | -0.678 | 0.266 | 1.11 | -0.135 | -0.982 | -0.188 | 19.3 | 19.33 | 1307 | -- | -- |
| 154.63 | 0.579 | 3.3 | -0.414 | 0.245 | 1.18 | -0.186 | -- | -0.118 | 18.9 | 17.56 | 1193 | -- | -- |
| 154.13 | 0.578 | 3.34 | -0.658 | 0.255 | 1.11 | -- | -0.956 | -0.184 | 19.2 | 19.33 | 1261 | -- | -- |
| 154.7 | 0.579 | 3.31 | -0.426 | 0.234 | 1.26 | -- | -- | -0.121 | 18.6 | 16.67 | 1178 | -- | -- |
| 154.89 | 0.58 | 3.33 | -0.606 | -- | 1.22 | -- | -0.917 | -0.165 | -- | 19.12 | 914 | -- | -- |
| 185.79 | 0.639 | 3.26 | -0.0151 | 0.279 | -- | 0.136 | -- | 0.127 | 21.4 | -- | -- | -- | -- |
| 185.85 | 0.638 | 3.26 | -0.0196 | 0.28 | -- | -- | -- | 0.127 | 21.2 | -- | -- | -- | -- |
| 155.55 | 0.581 | 3.3 | -0.405 | -- | 1.27 | -- | -- | -0.109 | -- | 17.71 | 903 | -- | -- |
| 158.56 | 0.586 | 3.29 | -- | 0.212 | 0.963 | -- | -- | -0.0424 | 18.5 | 19.88 | 1126 | -- | -- |
| 190.39 | 0.645 | 3.25 | -0.0185 | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
| 185.86 | 0.638 | 3.25 | -- | 0.28 | -- | -- | -- | 0.129 | 21.2 | -- | -- | -- | -- |
| 159.19 | 0.588 | 3.28 | -- | -- | 1.05 | -- | -- | -0.0381 | -- | 19.87 | 889 | -- | -- |
| 190.4 | 0.644 | 3.25 | -- | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.36 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 2 | 152.41 | temperature | 30 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 17 | 152.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 18 | 152.51 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 19 | 152.51 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 20 | 152.51 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 23 | 152.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 126 | 153.05 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 130 | 153.15 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 149 | 153.27 | temperature | 30 | 14400 | > th | dose independent | sin | 13 | NA |
| 152 | 153.31 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 157 | 153.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 158 | 153.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 159 | 153.40 | temperature | 30 | 14400 | > th | dose dependent | sin | 12 | NA |
| 172 | 153.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 4 |
| 176 | 153.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 13 |
| 182 | 153.51 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 193 | 153.56 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 310 | 153.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 390 | 153.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 417 | 154.03 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 445 | 154.08 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 508 | 154.16 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 562 | 154.23 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 614 | 154.30 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 689 | 154.38 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 749 | 154.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 803 | 154.49 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 814 | 154.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 819 | 154.50 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 861 | 154.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 928 | 154.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 995 | 154.70 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 12 |