Os12g0271600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Myosin heavy chain-like.
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Os12g0271600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Myosin heavy chain-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.75 | 0.203 | 9.41 | 0.331 | 0.507 | 0.848 | 0.0928 | 0.31 | 0.32 | 11 | 31.09 | 286 | -- | -- |
| 18.85 | 0.202 | 9.4 | 0.37 | 0.516 | 0.844 | 0.0531 | -- | 0.331 | 10.9 | 31.3 | 281 | -- | -- |
| 18.78 | 0.202 | 9.41 | 0.339 | 0.506 | 0.85 | -- | 0.28 | 0.321 | 11 | 31.17 | 288 | -- | -- |
| 18.86 | 0.202 | 9.4 | 0.377 | 0.51 | 0.86 | -- | -- | 0.332 | 11 | 31.32 | 287 | -- | -- |
| 27.41 | 0.244 | 9.42 | 0.359 | -- | 1.06 | -- | 0.43 | 0.332 | -- | 33 | 679 | -- | -- |
| 27.67 | 0.247 | 9.43 | 0.182 | 0.555 | -- | 0.0551 | -- | 0.181 | 9.1 | -- | -- | -- | -- |
| 27.68 | 0.246 | 9.43 | 0.184 | 0.555 | -- | -- | -- | 0.181 | 9.1 | -- | -- | -- | -- |
| 27.54 | 0.244 | 9.41 | 0.446 | -- | 1.07 | -- | -- | 0.345 | -- | 42.59 | 679 | -- | -- |
| 22.53 | 0.221 | 9.42 | -- | 0.502 | 0.716 | -- | -- | 0.245 | 10.5 | 39.82 | 276 | -- | -- |
| 45.47 | 0.315 | 9.45 | 0.183 | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
| 28.57 | 0.25 | 9.43 | -- | 0.555 | -- | -- | -- | 0.16 | 9.07 | -- | -- | -- | -- |
| 32.27 | 0.265 | 9.42 | -- | -- | 0.909 | -- | -- | 0.275 | -- | 48.83 | 649 | -- | -- |
| 46.35 | 0.318 | 9.45 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 27 | 18.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 35 | 18.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 68 | 18.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 81 | 18.84 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 110 | 19.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 114 | 19.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 122 | 19.09 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 164 | 19.33 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 244 | 19.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 260 | 19.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 265 | 19.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 266 | 19.84 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 318 | 19.96 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 343 | 20.01 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 369 | 20.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 392 | 20.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 408 | 20.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 431 | 20.14 | temperature | 20 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 432 | 20.14 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 435 | 20.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 442 | 20.15 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 451 | 20.16 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 464 | 20.17 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 466 | 20.17 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 4 |
| 607 | 20.25 | temperature | 25 | 4320 | < th | dose independent | sin | 14 | NA |
| 666 | 20.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 672 | 20.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 13 |
| 674 | 20.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 755 | 20.33 | temperature | 25 | 4320 | > th | dose independent | sin | 15 | NA |
| 757 | 20.33 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 762 | 20.33 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 797 | 20.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 804 | 20.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 827 | 20.36 | temperature | 20 | 4320 | > th | dose dependent | sin | 15 | NA |
| 890 | 20.39 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 19 |
| 917 | 20.40 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 955 | 20.41 | temperature | 10 | 4320 | > th | dose dependent | sin | 15 | NA |