Os12g0270300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0270300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.38 | 0.309 | 9.69 | 0.217 | 0.642 | -1.68 | 0.0799 | 0.558 | -0.0366 | 7.83 | 19.32 | 336 | -- | -- |
| 43.31 | 0.307 | 9.7 | 0.151 | 0.651 | -1.69 | -0.05 | -- | -0.0443 | 7.49 | 18.53 | 368 | -- | -- |
| 43.15 | 0.306 | 9.7 | 0.205 | 0.626 | -1.7 | -- | 0.378 | -0.044 | 7.52 | 18.8 | 376 | -- | -- |
| 43.26 | 0.306 | 9.7 | 0.134 | 0.629 | -1.68 | -- | -- | -0.0619 | 7.46 | 18.6 | 379 | -- | -- |
| 57.93 | 0.355 | 9.68 | 0.493 | -- | -2.07 | -- | 1.58 | 0.0818 | -- | 20.17 | 438 | -- | -- |
| 88.65 | 0.441 | 9.76 | -0.283 | 1.19 | -- | 0.212 | -- | -0.356 | 6.57 | -- | -- | -- | -- |
| 88.76 | 0.441 | 9.76 | -0.281 | 1.19 | -- | -- | -- | -0.357 | 6.56 | -- | -- | -- | -- |
| 58.06 | 0.355 | 9.7 | 0.241 | -- | -2.09 | -- | -- | 0.0235 | -- | 19.32 | 459 | -- | -- |
| 43.64 | 0.308 | 9.71 | -- | 0.644 | -1.63 | -- | -- | -0.0846 | 7.45 | 18.77 | 375 | -- | -- |
| 162.44 | 0.596 | 9.78 | -0.251 | -- | -- | -- | -- | -0.333 | -- | -- | -- | -- | -- |
| 90.84 | 0.446 | 9.75 | -- | 1.19 | -- | -- | -- | -0.326 | 6.57 | -- | -- | -- | -- |
| 59.4 | 0.359 | 9.71 | -- | -- | -2 | -- | -- | -0.0152 | -- | 19.83 | 457 | -- | -- |
| 164.11 | 0.598 | 9.78 | -- | -- | -- | -- | -- | -0.305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 6 | 42.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 25 | 43.02 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 87 | 43.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 13 |
| 145 | 43.56 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 148 | 43.57 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 173 | 43.63 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 335 | 44.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 357 | 44.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 405 | 44.33 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 443 | 44.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 476 | 44.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 483 | 44.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 603 | 44.92 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 623 | 44.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 627 | 44.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 632 | 44.99 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 718 | 45.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 759 | 45.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 760 | 45.27 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 767 | 45.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 804 | 45.38 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 870 | 45.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 21 |
| 886 | 45.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 979 | 45.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 18 |