Os12g0267700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os12g0267700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.52 | 0.34 | 6.57 | -0.66 | 0.59 | -0.669 | -0.89 | -0.213 | 0.0862 | 22.8 | 22.2 | 1964 | -- | -- |
| 52.62 | 0.338 | 6.58 | -0.731 | 0.589 | -0.667 | -0.877 | -- | 0.0683 | 22.8 | 22.24 | 1968 | -- | -- |
| 55.63 | 0.347 | 6.57 | -0.574 | 0.62 | -0.647 | -- | -0.274 | 0.0961 | 22.9 | 22.4 | 1711 | -- | -- |
| 55.67 | 0.348 | 6.57 | -0.707 | 0.623 | -0.69 | -- | -- | 0.0768 | 22.9 | 22 | 1715 | -- | -- |
| 71.94 | 0.395 | 6.53 | -0.684 | -- | -0.674 | -- | 0.328 | 0.143 | -- | 21.9 | 780 | -- | -- |
| 69.01 | 0.389 | 6.52 | -0.466 | 0.624 | -- | -0.893 | -- | 0.301 | 22.8 | -- | -- | -- | -- |
| 72.33 | 0.398 | 6.52 | -0.431 | 0.628 | -- | -- | -- | 0.303 | 22.9 | -- | -- | -- | -- |
| 71.54 | 0.394 | 6.56 | -0.679 | -- | -0.766 | -- | -- | 0.0656 | -- | 21.95 | 795 | -- | -- |
| 66.57 | 0.38 | 6.55 | -- | 0.622 | -0.496 | -- | -- | 0.197 | 22.8 | 22.41 | 1607 | -- | -- |
| 96.82 | 0.46 | 6.51 | -0.417 | -- | -- | -- | -- | 0.308 | -- | -- | -- | -- | -- |
| 77.22 | 0.411 | 6.51 | -- | 0.624 | -- | -- | -- | 0.351 | 22.9 | -- | -- | -- | -- |
| 82.46 | 0.423 | 6.54 | -- | -- | -0.615 | -- | -- | 0.169 | -- | 22.3 | 761 | -- | -- |
| 101.41 | 0.47 | 6.5 | -- | -- | -- | -- | -- | 0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.57 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 2 | 51.63 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 8 | 51.74 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 45 | 52.46 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 63 | 52.74 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 75 | 52.93 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 81 | 53.03 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 101 | 53.23 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 124 | 53.47 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 131 | 53.51 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 138 | 53.55 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 165 | 53.70 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 169 | 53.72 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 280 | 54.01 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 288 | 54.02 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 305 | 54.07 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 318 | 54.10 | temperature | 25.0 | 1440 | < th | dose dependent | no | NA | NA |
| 389 | 54.30 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 441 | 54.47 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 444 | 54.47 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 460 | 54.53 | temperature | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 486 | 54.59 | temperature | 15.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 533 | 54.69 | temperature | 15.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 546 | 54.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 548 | 54.73 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 564 | 54.76 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 566 | 54.76 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 608 | 54.88 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 618 | 54.90 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 619 | 54.90 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 624 | 54.91 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 626 | 54.92 | temperature | 30.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 643 | 54.94 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 665 | 54.99 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 683 | 55.00 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 749 | 55.09 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 899 | 55.28 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 921 | 55.31 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 932 | 55.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 933 | 55.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 957 | 55.34 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |