Os12g0267100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tryptophan 2-monooxygenase (EC 1.13.12.3).
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Os12g0267100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tryptophan 2-monooxygenase (EC 1.13.12.3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.46 | 0.408 | 3.17 | -0.481 | 0.198 | 3.26 | 0.00118 | -9.32 | -0.0515 | 10.6 | 0.1208 | 706 | -- | -- |
| 80.92 | 0.419 | 3.12 | -0.331 | 0.171 | 0.593 | -0.0915 | -- | -0.106 | 10.9 | -1.273 | 277 | -- | -- |
| 75.44 | 0.405 | 3.17 | -0.483 | 0.198 | 3.25 | -- | -9.31 | -0.0519 | 10.6 | 0.1394 | 682 | -- | -- |
| 78.46 | 0.413 | 3.12 | -0.295 | 0.19 | 0.678 | -- | -- | -0.072 | 10.9 | -0.9903 | 671 | -- | -- |
| 77.77 | 0.411 | 3.17 | -0.466 | -- | 2.78 | -- | -7.87 | -0.0501 | -- | 1.58e-05 | 663 | -- | -- |
| 81.78 | 0.424 | 3.12 | -0.233 | 0.179 | -- | -0.186 | -- | -0.0934 | 10.6 | -- | -- | -- | -- |
| 81.92 | 0.424 | 3.12 | -0.24 | 0.18 | -- | -- | -- | -0.0939 | 10.6 | -- | -- | -- | -- |
| 81.02 | 0.419 | 3.11 | -0.299 | -- | 0.625 | -- | -- | -0.0708 | -- | -0.8077 | 671 | -- | -- |
| 81.06 | 0.419 | 3.1 | -- | 0.203 | 0.564 | -- | -- | -0.0431 | 10.9 | -0.06832 | 671 | -- | -- |
| 83.93 | 0.428 | 3.12 | -0.244 | -- | -- | -- | -- | -0.0948 | -- | -- | -- | -- | -- |
| 83.45 | 0.427 | 3.11 | -- | 0.182 | -- | -- | -- | -0.0672 | 10.7 | -- | -- | -- | -- |
| 83.56 | 0.426 | 3.11 | -- | -- | 0.506 | -- | -- | -0.0482 | -- | 0.3164 | 671 | -- | -- |
| 85.49 | 0.432 | 3.11 | -- | -- | -- | -- | -- | -0.0678 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.87 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 3 |
| 3 | 75.12 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 3 |
| 4 | 75.20 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 5 | 75.21 | precipitation | 0.1 | 720 | > th | dose dependent | sin | 1 | NA |
| 7 | 75.25 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 20 | 75.36 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 22 | 75.38 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 5 | 15 |
| 27 | 75.40 | humidity | 60.0 | 10 | < th | dose independent | rect. | 17 | 17 |
| 32 | 75.42 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 57 | 75.48 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 60 | 75.49 | humidity | 60.0 | 90 | < th | dose independent | rect. | 16 | 18 |
| 61 | 75.49 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 16 | 18 |
| 68 | 75.51 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 2 | 17 |
| 70 | 75.51 | precipitation | 0.1 | 720 | > th | dose dependent | no | NA | NA |
| 71 | 75.51 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 79 | 75.51 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 80 | 75.51 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 117 | 75.60 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 5 | 22 |
| 118 | 75.60 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 19 | 14 |
| 119 | 75.61 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 136 | 75.63 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 153 | 75.64 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 163 | 75.66 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 179 | 75.72 | humidity | 60.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 181 | 75.72 | humidity | 60.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 235 | 75.72 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 297 | 75.73 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 345 | 75.74 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 418 | 75.76 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 454 | 75.81 | radiation | 40.0 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 474 | 75.83 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 478 | 75.84 | precipitation | 0.1 | 720 | > th | dose independent | sin | 1 | NA |
| 511 | 75.87 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 545 | 75.90 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 563 | 75.93 | wind | 1.0 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 636 | 76.00 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 9 | 22 |
| 693 | 76.02 | precipitation | 0.1 | 720 | > th | dose independent | no | NA | NA |
| 694 | 76.02 | precipitation | 0.1 | 720 | < th | dose independent | no | NA | NA |
| 697 | 76.02 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 12 | 23 |
| 701 | 76.02 | precipitation | 0.1 | 720 | < th | dose dependent | no | NA | NA |
| 714 | 76.05 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 719 | 76.06 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 754 | 76.15 | precipitation | 0.1 | 720 | < th | dose independent | sin | 1 | NA |
| 755 | 76.15 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 1 | NA |
| 805 | 76.28 | wind | 1.0 | 10 | < th | dose independent | rect. | 8 | 10 |
| 810 | 76.28 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 16 |
| 812 | 76.28 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 9 | 19 |
| 817 | 76.29 | wind | 1.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 874 | 76.35 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 880 | 76.35 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 884 | 76.35 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 890 | 76.35 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 13 |
| 894 | 76.35 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 932 | 76.39 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 12 | 11 |
| 970 | 76.42 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 16 | 18 |
| 972 | 76.42 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 16 | 18 |