FiT-DB / Search/ Help/ Sample detail

Os12g0266000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.57 (0.0248) R2 : 0.859
β1 : -1.27 (0.0908) R2dD : 0.0632 R2D : 0.0679
β2 : 3.09 (0.0615) R2dC : 0.785 R2C : 0.797
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.144 (0.0529) R2dN8 : 0.0031 R2N8 : -0.000155
σ : 0.466
deviance : 98.99
__
_____
C
peak time of C : 15
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.99 0.41 9.54 -1.22 2.05 -1.61 -2.39 -2.9 -0.176 13.6 0.5902 659 -- --
85.91 0.432 9.56 -1.38 1.84 -1.85 -1.66 -- -0.189 13.2 0.47 631 -- --
86.6 0.437 9.57 -1.3 2.96 -0.189 -- 1.36 -0.153 15.3 0.5902 659 -- --
93.73 0.451 9.54 -1.39 1.91 -1.75 -- -- -0.206 13.4 0.4623 632 -- --
337.41 0.856 9.23 -1.49 -- -1.16 -- 0.0196 0.195 -- 0.54 200 -- --
97.02 0.462 9.56 -1.25 3.09 -- -0.775 -- -0.14 15 -- -- -- --
98.99 0.466 9.57 -1.27 3.09 -- -- -- -0.144 15 -- -- -- --
122.94 0.516 9.48 -1.02 -- -2.45 -- -- -0.0694 -- 1.413 383 -- --
141.05 0.553 9.54 -- 2.64 -0.72 -- -- -0.0361 14.6 1.582 664 -- --
647.37 1.19 9.58 -1.4 -- -- -- -- -0.225 -- -- -- -- --
141.56 0.557 9.53 -- 3.12 -- -- -- -0.00281 15 -- -- -- --
164.61 0.598 9.55 -- -- -2.67 -- -- -0.0898 -- 1.498 401 -- --
699.27 1.23 9.54 -- -- -- -- -- -0.0691 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.21 radiation 30.0 270 < th dose dependent rect. 16 14
8 63.67 radiation 20.0 270 < th dose independent rect. 16 14
14 65.11 atmosphere 995.0 270 > th dose independent rect. 16 14
17 65.68 humidity 50.0 270 > th dose independent rect. 16 14
20 65.87 precipitation 0.1 270 < th dose independent rect. 11 14
21 65.87 precipitation 0.1 270 < th dose dependent rect. 11 14
23 66.00 temperature 20.0 270 > th dose independent rect. 11 14
25 66.33 precipitation 0.1 270 < th dose independent rect. 1 10
26 66.33 precipitation 0.1 270 < th dose dependent rect. 1 10
28 66.52 precipitation 0.1 270 < th dose independent rect. 6 10
29 66.52 precipitation 0.1 270 < th dose dependent rect. 6 10
30 66.55 temperature 10.0 270 > th dose independent rect. 6 10
31 66.55 atmosphere 1015.0 270 < th dose independent rect. 6 10
32 66.55 temperature 10.0 270 > th dose independent rect. 16 14
33 66.55 radiation 40.0 270 < th dose independent rect. 16 14
36 66.64 wind 9.0 270 < th dose independent rect. 11 14
40 66.88 wind 7.0 270 < th dose independent rect. 1 10
41 66.91 wind 9.0 270 < th dose independent rect. 6 10
42 66.91 temperature 30.0 270 < th dose independent rect. 16 14
43 66.92 temperature 10.0 270 > th dose independent rect. 1 10
44 66.92 atmosphere 995.0 270 > th dose independent rect. 1 10
45 66.92 atmosphere 1015.0 270 < th dose independent rect. 1 10
46 66.92 temperature 10.0 270 > th dose independent rect. 11 14
58 67.06 humidity 50.0 270 > th dose independent rect. 1 10
59 67.06 wind 9.0 270 < th dose independent rect. 16 14
68 67.74 temperature 20.0 270 > th dose independent rect. 21 4
72 68.02 precipitation 0.1 270 < th dose independent rect. 16 14
73 68.02 precipitation 0.1 270 < th dose dependent rect. 16 14
75 68.10 temperature 10.0 270 > th dose dependent rect. 10 15
99 69.06 wind 1.0 270 > th dose independent rect. 6 10
100 69.07 atmosphere 995.0 270 > th dose independent rect. 6 10
111 69.54 temperature 10.0 270 > th dose dependent rect. 21 4
112 69.58 humidity 50.0 270 > th dose independent rect. 6 10
114 69.62 radiation 1.0 90 > th dose independent sin 23 NA
121 69.80 wind 1.0 270 > th dose independent rect. 16 13
144 70.38 temperature 10.0 90 > th dose dependent rect. 21 6
149 70.49 precipitation 0.1 720 < th dose independent rect. 11 7
150 70.49 precipitation 0.1 720 < th dose dependent rect. 11 7
154 70.64 temperature 10.0 90 > th dose dependent rect. 13 14
160 70.73 wind 9.0 270 < th dose dependent rect. 1 10
176 70.88 radiation 1.0 720 < th dose dependent rect. 17 12
199 71.18 temperature 30.0 270 < th dose independent rect. 14 7
207 71.23 temperature 10.0 720 > th dose dependent rect. 13 4
209 71.24 temperature 20.0 10 > th dose independent rect. 22 6
225 71.41 precipitation 0.1 720 < th dose independent rect. 13 5
227 71.41 precipitation 0.1 720 < th dose dependent rect. 13 5
233 71.51 precipitation 0.1 720 < th dose independent rect. 5 13
234 71.51 precipitation 0.1 720 < th dose dependent rect. 5 13
241 71.61 atmosphere 995.0 270 > th dose independent rect. 1 20
244 71.64 radiation 1.0 270 > th dose independent rect. 6 10
257 71.80 temperature 30.0 270 < th dose dependent rect. 15 5
259 71.82 temperature 30.0 270 < th dose independent rect. 15 5
262 71.86 atmosphere 995.0 720 > th dose independent rect. 18 17
289 72.06 temperature 15.0 720 > th dose independent rect. 17 20
290 72.07 temperature 30.0 10 < th dose dependent rect. 16 6
292 72.08 atmosphere 995.0 720 > th dose independent rect. 17 20
300 72.14 precipitation 0.1 90 < th dose independent rect. 3 10
301 72.14 temperature 30.0 270 < th dose independent rect. 1 19
302 72.14 precipitation 0.1 90 < th dose dependent rect. 3 10
311 72.28 wind 9.0 720 < th dose independent rect. 18 17
317 72.34 atmosphere 995.0 720 > th dose independent rect. 17 4
318 72.36 temperature 15.0 10 > th dose dependent rect. 22 6
321 72.38 humidity 80.0 90 > th dose independent rect. 21 6
332 72.38 humidity 60.0 90 > th dose dependent rect. 21 6
341 72.41 temperature 10.0 720 > th dose independent rect. 11 7
342 72.41 atmosphere 1015.0 720 < th dose independent rect. 11 7
344 72.41 temperature 10.0 720 > th dose independent rect. 18 17
347 72.44 atmosphere 1015.0 270 < th dose independent rect. 11 14
351 72.48 temperature 30.0 270 < th dose independent rect. 1 10
358 72.54 temperature 15.0 90 > th dose independent rect. 3 10
373 72.65 humidity 50.0 720 > th dose independent rect. 18 17
378 72.67 atmosphere 995.0 90 > th dose independent rect. 3 10
379 72.67 atmosphere 1015.0 90 < th dose independent rect. 3 10
382 72.67 temperature 30.0 10 < th dose dependent rect. 14 8
383 72.67 wind 9.0 90 < th dose dependent rect. 3 10
385 72.68 temperature 10.0 720 > th dose independent rect. 13 4
386 72.68 atmosphere 1015.0 720 < th dose independent rect. 13 4
397 72.72 wind 9.0 720 < th dose independent rect. 13 4
400 72.73 wind 9.0 720 < th dose independent rect. 18 11
404 72.76 radiation 40.0 270 < th dose dependent rect. 13 8
405 72.77 wind 9.0 90 < th dose independent rect. 3 10
409 72.79 temperature 10.0 720 > th dose independent rect. 22 10
410 72.79 temperature 30.0 720 < th dose independent rect. 22 10
411 72.79 humidity 50.0 720 > th dose independent rect. 22 10
413 72.79 atmosphere 995.0 720 > th dose independent rect. 22 10
414 72.79 temperature 10.0 720 > th dose independent rect. 8 14
415 72.79 temperature 10.0 10 > th dose dependent rect. 14 13
426 72.82 radiation 1.0 720 < th dose independent rect. 1 4
435 72.85 wind 9.0 720 < th dose independent rect. 22 10
438 72.85 humidity 50.0 720 > th dose independent rect. 18 11
439 72.85 radiation 20.0 720 < th dose independent rect. 18 11
442 72.85 temperature 10.0 720 > th dose independent rect. 5 13
443 72.85 atmosphere 1015.0 720 < th dose independent rect. 5 13
445 72.85 radiation 10.0 720 < th dose dependent rect. 1 4
451 72.87 wind 7.0 720 < th dose independent rect. 1 4
457 72.88 temperature 10.0 720 > th dose independent rect. 1 4
458 72.88 temperature 30.0 720 < th dose independent rect. 1 4
459 72.88 humidity 50.0 720 > th dose independent rect. 1 4
462 72.88 atmosphere 995.0 720 > th dose independent rect. 1 4
467 72.88 temperature 10.0 720 > th dose independent rect. 5 20
468 72.88 humidity 50.0 270 > th dose dependent rect. 21 4
482 72.92 radiation 40.0 720 < th dose independent rect. 22 10
489 72.95 atmosphere 1015.0 720 < th dose independent rect. 1 4
490 72.95 radiation 10.0 720 < th dose independent rect. 23 7
491 72.96 temperature 10.0 720 > th dose independent rect. 10 10
492 72.96 atmosphere 1015.0 720 < th dose independent rect. 10 10
498 72.96 temperature 10.0 720 > th dose independent rect. 20 14
499 72.96 atmosphere 995.0 720 > th dose independent rect. 20 14
516 72.99 atmosphere 1000.0 270 > th dose independent rect. 15 6
517 72.99 wind 9.0 720 < th dose independent rect. 23 7
521 73.01 temperature 10.0 720 > th dose independent rect. 23 7
522 73.01 temperature 30.0 720 < th dose independent rect. 23 7
523 73.01 humidity 50.0 720 > th dose independent rect. 23 7
526 73.01 atmosphere 995.0 720 > th dose independent rect. 23 7
531 73.01 temperature 10.0 720 > th dose independent rect. 6 17
533 73.02 temperature 10.0 270 > th dose dependent rect. 1 10
534 73.03 humidity 50.0 720 > th dose independent rect. 20 14
539 73.06 wind 9.0 720 < th dose independent rect. 17 20
552 73.10 temperature 30.0 10 < th dose dependent rect. 17 14
554 73.12 radiation 40.0 720 < th dose dependent rect. 23 7
564 73.15 temperature 10.0 720 > th dose independent rect. 17 4
565 73.15 radiation 30.0 720 < th dose independent rect. 17 4
567 73.15 temperature 10.0 720 > th dose independent rect. 21 20
574 73.17 temperature 30.0 270 < th dose dependent rect. 17 2
576 73.18 atmosphere 995.0 270 > th dose dependent rect. 14 7
577 73.19 precipitation 0.1 720 < th dose independent rect. 1 4
579 73.19 atmosphere 995.0 90 > th dose independent rect. 3 18
580 73.19 precipitation 0.1 720 < th dose dependent rect. 1 4
593 73.24 radiation 40.0 270 < th dose independent rect. 1 9
635 73.36 wind 9.0 720 < th dose independent rect. 20 14
641 73.38 wind 9.0 720 < th dose independent rect. 17 4
664 73.46 radiation 1.0 270 > th dose independent rect. 18 22
667 73.47 wind 9.0 720 < th dose independent rect. 5 4
668 73.47 temperature 10.0 720 > th dose independent rect. 5 4
669 73.47 humidity 50.0 720 > th dose independent rect. 5 4
670 73.47 atmosphere 995.0 720 > th dose independent rect. 5 4
671 73.47 atmosphere 1015.0 720 < th dose independent rect. 5 4
672 73.47 temperature 10.0 720 > th dose independent rect. 9 20
682 73.49 temperature 20.0 720 > th dose independent rect. 13 4
730 73.60 wind 9.0 90 < th dose dependent rect. 3 8
735 73.61 radiation 40.0 720 < th dose dependent rect. 17 4
751 73.64 precipitation 0.1 720 < th dose independent rect. 23 7
753 73.64 precipitation 0.1 720 < th dose dependent rect. 23 7
755 73.65 temperature 15.0 270 > th dose independent rect. 15 6
757 73.66 wind 1.0 270 > th dose independent rect. 11 14
761 73.68 precipitation 0.1 720 < th dose independent rect. 5 4
762 73.68 radiation 1.0 270 > th dose independent rect. 4 12
772 73.68 precipitation 0.1 720 < th dose dependent rect. 5 4
774 73.69 wind 9.0 720 < th dose independent rect. 5 20
784 73.75 radiation 30.0 270 < th dose independent rect. 14 7
785 73.75 temperature 15.0 270 > th dose independent rect. 1 20
809 73.82 temperature 10.0 10 > th dose dependent rect. 12 15
811 73.83 humidity 50.0 270 > th dose independent rect. 14 7
818 73.87 precipitation 0.1 720 < th dose independent rect. 18 11
820 73.87 precipitation 0.1 720 < th dose dependent rect. 18 11
855 74.00 wind 1.0 720 > th dose independent rect. 17 4
858 74.01 radiation 1.0 270 < th dose independent rect. 15 4
879 74.08 atmosphere 995.0 720 > th dose independent rect. 8 13
883 74.09 atmosphere 995.0 720 > th dose independent rect. 8 7
884 74.09 precipitation 0.1 90 < th dose independent rect. 3 8
895 74.09 precipitation 0.1 90 < th dose dependent rect. 3 8
914 74.14 atmosphere 995.0 720 > th dose independent rect. 9 11
943 74.23 precipitation 0.1 720 < th dose independent rect. 22 10
946 74.23 precipitation 0.1 720 < th dose dependent rect. 22 10
967 74.26 atmosphere 995.0 720 > th dose independent rect. 9 20
978 74.30 wind 9.0 270 < th dose independent rect. 21 4
979 74.30 temperature 10.0 270 > th dose independent rect. 21 4
980 74.30 temperature 30.0 270 < th dose independent rect. 21 4
981 74.30 humidity 50.0 270 > th dose independent rect. 21 4
984 74.30 atmosphere 995.0 270 > th dose independent rect. 21 4
985 74.30 radiation 1.0 270 < th dose independent rect. 21 4
993 74.30 radiation 1.0 270 < th dose dependent rect. 21 4
1000 74.32 precipitation 0.1 270 < th dose independent rect. 21 4