Os12g0265900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0265900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 163.03 | 0.6 | 10.2 | 2.45 | 2.12 | 1.43 | -2.04 | 0.926 | 0.912 | 20.5 | 19.54 | 3661 | -- | -- |
| 163.92 | 0.596 | 10.2 | 2.32 | 2.1 | 1.25 | -2.06 | -- | 0.853 | 20.4 | 19.72 | 3668 | -- | -- |
| 176.19 | 0.618 | 10.2 | 2.49 | 2.14 | 1.42 | -- | 0.892 | 0.913 | 20.4 | 19.4 | 3709 | -- | -- |
| 176.68 | 0.619 | 10.2 | 2.39 | 2.13 | 1.18 | -- | -- | 0.882 | 20.5 | 19.8 | 3698 | -- | -- |
| 424.78 | 0.96 | 10.1 | 2.54 | -- | 1.72 | -- | 1.11 | 0.927 | -- | 18.6 | 2262 | -- | -- |
| 187.57 | 0.642 | 10.1 | 3.01 | 2.15 | -- | -1.97 | -- | 1.18 | 20.5 | -- | -- | -- | -- |
| 200.03 | 0.662 | 10.1 | 3.07 | 2.15 | -- | -- | -- | 1.18 | 20.5 | -- | -- | -- | -- |
| 425.4 | 0.961 | 10.1 | 2.39 | -- | 1.59 | -- | -- | 0.886 | -- | 18.3 | 2247 | -- | -- |
| 190.39 | 0.643 | 10.3 | -- | 2.16 | 2.53 | -- | -- | 0.232 | 20.6 | 18.2 | 47520 | -- | -- |
| 460.27 | 1 | 10.1 | 3.07 | -- | -- | -- | -- | 1.15 | -- | -- | -- | -- | -- |
| 449.04 | 0.991 | 10.2 | -- | 2.14 | -- | -- | -- | 0.833 | 20.6 | -- | -- | -- | -- |
| 445.68 | 0.983 | 10.3 | -- | -- | 2.58 | -- | -- | 0.204 | -- | 18.34 | 47520 | -- | -- |
| 708.11 | 1.24 | 10.2 | -- | -- | -- | -- | -- | 0.815 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.32 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 2 | 150.55 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 3 | 151.83 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 4 | 151.98 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 5 | 152.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 7 | 152.12 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 10 | 152.31 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 14 | 152.54 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 17 | 152.64 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 21 | 152.68 | radiation | 20 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 22 | 152.73 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 23 | 152.78 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 38 | 152.96 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 48 | 153.09 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 51 | 153.12 | radiation | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 59 | 153.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 78 | 153.25 | radiation | 20 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 94 | 153.27 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 96 | 153.27 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 117 | 153.29 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 157 | 153.35 | radiation | 20 | 43200 | < th | dose independent | sin | 21 | NA |
| 161 | 153.36 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 187 | 153.38 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 6 |
| 189 | 153.39 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 7 |
| 249 | 153.43 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 286 | 153.46 | radiation | 20 | 43200 | < th | dose independent | no | NA | NA |
| 360 | 153.46 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 366 | 153.48 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 370 | 153.49 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 371 | 153.50 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 465 | 153.53 | radiation | 10 | 43200 | > th | dose dependent | rect. | 13 | 21 |
| 515 | 153.58 | radiation | 10 | 43200 | < th | dose independent | sin | 4 | NA |
| 539 | 153.61 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 588 | 153.63 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 589 | 153.63 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 626 | 153.65 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 635 | 153.65 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 667 | 153.66 | radiation | 40 | 43200 | > th | dose dependent | sin | 15 | NA |
| 749 | 153.69 | radiation | 30 | 43200 | < th | dose dependent | sin | 10 | NA |
| 800 | 153.71 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 803 | 153.72 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 805 | 153.72 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 807 | 153.72 | radiation | 20 | 43200 | > th | dose dependent | sin | 18 | NA |
| 815 | 153.73 | radiation | 30 | 43200 | < th | dose dependent | rect. | 12 | 22 |
| 867 | 153.75 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 910 | 153.76 | radiation | 40 | 43200 | > th | dose independent | sin | 16 | NA |
| 946 | 153.77 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |