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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0265800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.02) R2 : 0.0123
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.101 (0.0422) R2dN8 : 0.0159 R2N8 : 0.0123
σ : 0.378
deviance : 65.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.13 0.37 2.95 -0.143 0.0833 -0.327 -0.248 1.51 0.0807 19.2 1.044 16 -- --
63.93 0.375 2.94 -0.0828 0.00667 -0.166 -0.332 -- 0.0952 23.5 1.044 16 -- --
62.21 0.37 2.95 -0.137 0.085 -0.298 -- 1.33 0.0845 17.7 1.044 16 -- --
64.16 0.373 2.94 -0.0771 0.0764 -0.231 -- -- 0.0981 17.8 1.1 16 -- --
62.54 0.37 2.95 -0.134 -- -0.261 -- 1.3 0.0826 -- 1.048 16 -- --
64.9 0.378 2.94 -0.0625 0.0264 -- -0.316 -- 0.0938 23.1 -- -- -- --
65.31 0.378 2.94 -0.0492 0.0314 -- -- -- 0.0953 21.4 -- -- -- --
64.41 0.375 2.93 -0.0688 -- -0.163 -- -- 0.0966 -- 1.1 16 -- --
64.3 0.376 2.93 -- 0.07 -0.184 -- -- 0.106 17.9 1.037 16 -- --
65.37 0.378 2.94 -0.049 -- -- -- -- 0.0951 -- -- -- -- --
65.38 0.378 2.93 -- 0.0314 -- -- -- 0.101 21.3 -- -- -- --
64.53 0.375 2.93 -- -- -0.157 -- -- 0.104 -- 1.1 16 -- --
65.43 0.378 2.93 -- -- -- -- -- 0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.08 temperature 20.0 30 > th dose dependent rect. 2 1
2 52.14 atmosphere 1005.0 30 > th dose dependent rect. 2 1
4 52.18 temperature 20.0 30 > th dose independent rect. 2 1
5 52.20 wind 3.0 30 < th dose dependent rect. 2 1
7 52.21 atmosphere 1005.0 30 > th dose independent rect. 2 1
12 52.25 wind 3.0 30 < th dose independent rect. 2 1
16 52.32 humidity 80.0 30 > th dose independent rect. 2 1
19 52.35 temperature 10.0 30 > th dose independent rect. 2 1
21 52.35 temperature 30.0 30 < th dose independent rect. 2 1
22 52.35 humidity 50.0 30 > th dose independent rect. 2 1
26 52.35 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 52.35 radiation 1.0 30 < th dose independent rect. 2 1
33 52.35 precipitation 0.1 30 < th dose independent rect. 2 1
34 52.35 temperature 10.0 30 > th dose independent rect. 3 23
35 52.35 humidity 50.0 30 > th dose dependent rect. 2 1
37 52.35 radiation 1.0 30 < th dose dependent rect. 2 1
42 52.35 precipitation 0.1 30 < th dose dependent rect. 2 1
49 52.67 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 52.95 temperature 30.0 30 < th dose dependent rect. 2 1
55 53.28 wind 1.0 30 > th dose independent rect. 2 1
67 53.94 wind 9.0 30 < th dose independent rect. 3 23
99 54.13 radiation 10.0 14400 < th dose dependent rect. 3 1
101 54.15 wind 9.0 1440 < th dose independent rect. 3 1
102 54.15 temperature 10.0 1440 > th dose independent rect. 3 1
105 54.15 temperature 30.0 1440 < th dose independent rect. 3 1
109 54.15 humidity 50.0 1440 > th dose independent rect. 3 1
118 54.15 atmosphere 995.0 1440 > th dose independent rect. 3 1
119 54.15 radiation 1.0 1440 < th dose independent rect. 3 1
139 54.15 temperature 10.0 1440 > th dose independent rect. 4 23
142 54.15 radiation 1.0 1440 < th dose dependent rect. 3 1
166 55.74 atmosphere 995.0 30 > th dose independent rect. 3 23
167 55.77 precipitation 0.1 30 < th dose independent rect. 3 23
168 55.77 precipitation 0.1 30 < th dose dependent rect. 3 23
196 59.07 humidity 50.0 30 > th dose independent rect. 3 23
201 59.38 temperature 30.0 30 < th dose independent rect. 3 23
216 60.20 atmosphere 1015.0 30 < th dose independent rect. 3 23
262 60.96 temperature 25.0 270 > th dose independent rect. 23 4
289 61.42 wind 1.0 10 < th dose independent rect. 22 5
309 61.56 wind 1.0 30 > th dose independent rect. 3 23
310 61.58 humidity 90.0 90 < th dose independent rect. 2 1
312 61.59 wind 9.0 30 < th dose dependent rect. 3 23
315 61.63 atmosphere 995.0 720 > th dose independent rect. 15 8
318 61.65 atmosphere 995.0 720 > th dose independent rect. 23 16
319 61.65 wind 1.0 10 > th dose independent rect. 23 23
322 61.66 atmosphere 995.0 720 > th dose independent rect. 11 16
323 61.68 wind 9.0 720 < th dose independent rect. 3 8
325 61.72 temperature 25.0 270 > th dose independent rect. 19 8
326 61.72 precipitation 0.1 720 < th dose independent rect. 23 16
327 61.72 precipitation 0.1 720 < th dose dependent rect. 23 16
329 61.73 temperature 25.0 270 < th dose independent rect. 20 11
332 61.76 wind 1.0 10 > th dose independent sin 15 NA
343 61.77 wind 1.0 10 > th dose independent rect. 21 23
344 61.78 precipitation 0.1 720 < th dose independent rect. 3 8
345 61.78 precipitation 0.1 720 < th dose dependent rect. 3 8
351 61.84 temperature 25.0 270 > th dose dependent rect. 23 4
354 61.89 temperature 10.0 720 > th dose independent rect. 15 8
356 61.89 temperature 10.0 720 > th dose independent rect. 23 16
362 61.93 temperature 10.0 720 > th dose independent rect. 3 8
363 61.93 atmosphere 995.0 720 > th dose independent rect. 3 8
364 61.93 temperature 10.0 720 > th dose independent rect. 11 16
368 61.94 wind 1.0 10 < th dose independent rect. 7 20
369 61.94 temperature 25.0 270 > th dose dependent rect. 23 7
376 61.97 radiation 20.0 30 < th dose dependent rect. 3 23
381 62.00 temperature 25.0 270 < th dose independent sin 11 NA
392 62.03 temperature 25.0 270 > th dose independent sin 11 NA
398 62.05 precipitation 0.1 720 < th dose independent rect. 7 8
401 62.05 temperature 20.0 30 > th dose dependent rect. 20 7
402 62.05 precipitation 0.1 720 < th dose dependent rect. 7 8
413 62.10 humidity 50.0 720 > th dose independent rect. 3 8
421 62.12 atmosphere 995.0 720 > th dose independent rect. 3 16
422 62.12 precipitation 0.1 720 < th dose independent rect. 3 16
424 62.12 precipitation 0.1 720 < th dose dependent rect. 3 16
435 62.16 atmosphere 995.0 720 > th dose independent rect. 15 16
443 62.19 atmosphere 1015.0 720 < th dose independent rect. 3 8
448 62.21 atmosphere 995.0 720 > th dose independent rect. 7 8
449 62.21 precipitation 0.1 720 < th dose independent rect. 15 8
452 62.21 precipitation 0.1 720 < th dose dependent rect. 15 8
456 62.23 temperature 10.0 30 > th dose dependent rect. 3 23
476 62.32 wind 9.0 720 < th dose independent rect. 19 8
477 62.32 wind 1.0 10 > th dose independent rect. 23 11
489 62.37 temperature 25.0 1440 < th dose independent rect. 1 1
490 62.37 temperature 10.0 720 > th dose independent rect. 7 8
491 62.37 atmosphere 1015.0 720 < th dose independent rect. 7 8
494 62.37 temperature 10.0 720 > th dose independent rect. 15 16
521 62.42 temperature 10.0 720 > th dose independent rect. 19 8
523 62.42 humidity 50.0 720 > th dose independent rect. 19 8
524 62.42 atmosphere 995.0 720 > th dose independent rect. 19 8
525 62.42 radiation 1.0 720 < th dose independent rect. 19 8
531 62.42 temperature 10.0 720 > th dose independent rect. 3 16
533 62.42 radiation 1.0 720 < th dose dependent rect. 19 8
555 62.47 wind 1.0 10 < th dose independent rect. 2 10
573 62.50 wind 1.0 10 > th dose independent rect. 23 9
591 62.55 wind 1.0 10 > th dose independent no NA NA
608 62.55 wind 1.0 10 > th dose independent rect. 23 21
615 62.55 wind 1.0 30 < th dose dependent rect. 22 5
655 62.63 atmosphere 1015.0 720 < th dose independent rect. 3 16
660 62.64 precipitation 0.1 720 < th dose independent rect. 11 16
661 62.64 humidity 90.0 10 < th dose dependent rect. 20 1
662 62.64 precipitation 0.1 720 < th dose dependent rect. 11 16
666 62.66 precipitation 0.1 720 < th dose independent rect. 19 8
669 62.66 precipitation 0.1 720 < th dose dependent rect. 19 8
676 62.68 wind 1.0 10 < th dose independent rect. 2 21
692 62.70 wind 9.0 720 < th dose independent rect. 23 16
716 62.75 radiation 1.0 30 < th dose independent rect. 3 23
722 62.77 wind 1.0 10 > th dose independent rect. 12 19
723 62.77 wind 1.0 10 > th dose independent rect. 12 23
726 62.77 humidity 50.0 30 > th dose dependent rect. 3 23
731 62.79 temperature 25.0 720 < th dose independent rect. 20 5
732 62.79 temperature 30.0 10 < th dose independent rect. 2 12
740 62.81 atmosphere 995.0 720 > th dose independent rect. 3 23
745 62.83 wind 1.0 10 > th dose independent rect. 16 15
746 62.83 wind 7.0 30 < th dose independent rect. 3 16
753 62.85 temperature 20.0 30 > th dose independent rect. 19 8
754 62.85 atmosphere 1000.0 10 > th dose independent rect. 14 12
755 62.85 wind 1.0 10 > th dose independent rect. 14 17
764 62.86 precipitation 0.1 720 < th dose independent rect. 3 23
768 62.86 precipitation 0.1 720 < th dose dependent rect. 3 23
776 62.88 wind 1.0 10 > th dose independent rect. 14 15
778 62.88 wind 9.0 720 < th dose dependent rect. 2 1
783 62.89 wind 1.0 10 < th dose independent sin 16 NA
786 62.89 atmosphere 995.0 720 > th dose independent rect. 15 23
796 62.91 precipitation 0.1 720 < th dose independent rect. 21 18
799 62.91 precipitation 0.1 720 < th dose dependent rect. 21 18
803 62.92 wind 1.0 720 > th dose independent rect. 15 8
807 62.92 temperature 30.0 30 < th dose independent rect. 14 12
814 62.93 wind 1.0 10 > th dose independent rect. 21 11
815 62.93 wind 1.0 10 > th dose independent rect. 21 13
819 62.94 atmosphere 1000.0 10 > th dose independent rect. 2 12
820 62.94 precipitation 0.1 720 < th dose independent rect. 3 12
824 62.94 precipitation 0.1 720 < th dose dependent rect. 3 12
825 62.94 temperature 10.0 30 > th dose dependent rect. 3 16
832 62.95 wind 9.0 10 < th dose independent rect. 14 12
841 62.96 radiation 40.0 10 < th dose independent rect. 14 12
854 62.98 atmosphere 995.0 720 > th dose independent rect. 14 1
859 62.98 temperature 10.0 10 > th dose independent rect. 2 12
861 62.98 temperature 10.0 10 > th dose independent rect. 14 12
863 62.98 atmosphere 1015.0 10 < th dose independent rect. 2 12
864 62.98 atmosphere 1015.0 720 < th dose independent rect. 3 12
890 62.99 precipitation 0.1 10 < th dose independent rect. 2 12
894 62.99 wind 1.0 10 > th dose independent rect. 12 17
903 62.99 precipitation 0.1 10 < th dose dependent rect. 2 12
904 63.00 atmosphere 1015.0 720 < th dose independent rect. 3 6
905 63.00 precipitation 0.1 720 < th dose independent rect. 3 6
907 63.00 wind 9.0 720 < th dose independent rect. 7 8
915 63.00 precipitation 0.1 720 < th dose dependent rect. 3 6
926 63.01 precipitation 0.1 10 < th dose independent rect. 14 12
932 63.01 precipitation 0.1 10 < th dose dependent rect. 14 12
946 63.02 atmosphere 995.0 30 > th dose independent rect. 12 14
949 63.02 atmosphere 995.0 720 > th dose independent rect. 9 18
981 63.04 humidity 50.0 10 > th dose independent rect. 14 12
993 63.05 atmosphere 995.0 720 > th dose independent rect. 15 6
995 63.05 temperature 15.0 90 > th dose independent rect. 3 16
998 63.06 temperature 25.0 720 < th dose independent rect. 21 2