Os12g0262000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAT dimerisation domain containing protein.
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Os12g0262000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAT dimerisation domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 354.91 | 0.877 | 3.05 | -0.104 | 0.119 | 6.19 | -0.684 | -5.72 | -0.109 | 20.8 | 1 | 10 | 14 | 2 |
| 356.89 | 0.88 | 3.04 | -0.0594 | 0.123 | 5.19 | -0.653 | -- | -0.12 | 20.5 | 1.1 | 10 | 14 | 2.11 |
| 356.46 | 0.879 | 3.05 | -0.0829 | 0.12 | 6.36 | -- | -6.27 | -0.109 | 21.1 | 1.012 | 10 | 14 | 2.55 |
| 358.26 | 0.882 | 3.04 | -0.0443 | 0.125 | 5.15 | -- | -- | -0.11 | 21 | 1.092 | 10 | 14 | 2.37 |
| 357.3 | 0.88 | 3.05 | -0.0814 | -- | 6.28 | -- | -6.02 | -0.109 | -- | 1.061 | 10 | 14 | 3.93 |
| 389.69 | 0.925 | 3.04 | 0.0196 | 0.106 | -- | -0.649 | -- | -0.123 | 21.7 | -- | -- | -- | -- |
| 390.83 | 0.926 | 3.04 | 0.0477 | 0.147 | -- | -- | -- | -0.119 | 19.1 | -- | -- | -- | -- |
| 359.16 | 0.883 | 3.04 | -0.0438 | -- | 5.15 | -- | -- | -0.109 | -- | 1.066 | 10 | 14 | 2.32 |
| 358.31 | 0.882 | 3.04 | -- | 0.126 | 5.14 | -- | -- | -0.105 | 20.9 | 1.091 | 10 | 14 | 2.41 |
| 391.97 | 0.925 | 3.04 | 0.045 | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
| 390.89 | 0.925 | 3.04 | -- | 0.147 | -- | -- | -- | -0.124 | 19.2 | -- | -- | -- | -- |
| 359.22 | 0.883 | 3.04 | -- | -- | 5.14 | -- | -- | -0.105 | -- | 0.8567 | 10 | 14 | 2.48 |
| 392.02 | 0.924 | 3.04 | -- | -- | -- | -- | -- | -0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 354.91 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 2 |
| 3 | 354.91 | wind | 1.0 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 29 | 359.35 | humidity | 60.0 | 30 | < th | dose independent | rect. | 14 | 2 |
| 38 | 360.78 | humidity | 60.0 | 30 | < th | dose dependent | rect. | 14 | 2 |
| 40 | 360.85 | radiation | 30.0 | 30 | > th | dose independent | rect. | 15 | 1 |
| 61 | 361.62 | radiation | 30.0 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 275 | 363.38 | wind | 7.0 | 30 | > th | dose independent | rect. | 20 | 12 |
| 277 | 363.39 | wind | 7.0 | 90 | > th | dose independent | rect. | 21 | 1 |
| 289 | 363.46 | wind | 7.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 298 | 363.55 | wind | 7.0 | 30 | > th | dose dependent | rect. | 20 | 12 |
| 302 | 363.57 | wind | 7.0 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 316 | 363.64 | wind | 7.0 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 360 | 364.01 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 21 | 1 |
| 362 | 364.01 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 460 | 366.49 | wind | 1.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 470 | 366.54 | wind | 1.0 | 10 | < th | dose dependent | rect. | 5 | 11 |
| 489 | 366.95 | wind | 1.0 | 10 | < th | dose independent | sin | 23 | NA |
| 508 | 367.14 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 21 | 1 |
| 519 | 367.14 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 21 | 1 |
| 538 | 367.58 | wind | 1.0 | 90 | < th | dose independent | rect. | 8 | 8 |
| 584 | 368.54 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 595 | 368.68 | wind | 1.0 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 613 | 368.91 | wind | 1.0 | 90 | < th | dose dependent | rect. | 8 | 8 |
| 750 | 370.26 | wind | 7.0 | 30 | > th | dose independent | rect. | 18 | 14 |
| 752 | 370.28 | wind | 7.0 | 30 | > th | dose independent | rect. | 18 | 10 |
| 756 | 370.31 | wind | 7.0 | 30 | > th | dose independent | rect. | 18 | 8 |
| 758 | 370.32 | wind | 7.0 | 30 | > th | dose independent | rect. | 18 | 4 |
| 789 | 370.59 | wind | 1.0 | 10 | > th | dose independent | sin | 23 | NA |
| 859 | 370.99 | temperature | 30.0 | 30 | > th | dose independent | rect. | 13 | 3 |
| 892 | 371.22 | wind | 3.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 953 | 371.65 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 955 | 371.74 | wind | 1.0 | 10 | < th | dose independent | rect. | 4 | 12 |
| 970 | 371.95 | temperature | 30.0 | 30 | > th | dose independent | rect. | 13 | 21 |
| 978 | 372.03 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 980 | 372.06 | wind | 1.0 | 90 | < th | dose independent | sin | 21 | NA |
| 982 | 372.08 | wind | 5.0 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 990 | 372.12 | wind | 3.0 | 30 | < th | dose independent | rect. | 1 | 16 |