Os12g0261300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os12g0261300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 236.3 | 0.722 | 6.82 | -4.67 | 3.46 | 1.55 | 0.246 | -9.39 | 0.037 | 8.88 | 25.59 | 4239 | -- | -- |
| 244.08 | 0.728 | 6.62 | -3.09 | 3.38 | 1.26 | 0.0942 | -- | 0.131 | 8.89 | 15.01 | 8617 | -- | -- |
| 236.18 | 0.716 | 6.87 | -5.03 | 3.47 | 1.82 | -- | -11.6 | 0.022 | 8.86 | 26.43 | 4211 | -- | -- |
| 243.64 | 0.727 | 6.63 | -2.96 | 3.42 | 1.19 | -- | -- | 0.135 | 8.9 | 14.65 | 8507 | -- | -- |
| 911.47 | 1.41 | 6.91 | -4.66 | -- | 1.44 | -- | -10.3 | 0.155 | -- | 26.78 | 4421 | -- | -- |
| 269.43 | 0.77 | 6.55 | -2.31 | 3.41 | -- | 0.281 | -- | 0.491 | 8.84 | -- | -- | -- | -- |
| 269.7 | 0.769 | 6.55 | -2.3 | 3.41 | -- | -- | -- | 0.491 | 8.84 | -- | -- | -- | -- |
| 889.23 | 1.39 | 6.69 | -2.62 | -- | 1.74 | -- | -- | 0.284 | -- | 10.89 | 8694 | -- | -- |
| 301.44 | 0.809 | 6.49 | -- | 3.03 | -1.03 | -- | -- | 0.294 | 9.37 | 35.7 | 47520 | -- | -- |
| 933.17 | 1.43 | 6.64 | -2.3 | -- | -- | -- | -- | 0.516 | -- | -- | -- | -- | -- |
| 409.16 | 0.946 | 6.49 | -- | 3.41 | -- | -- | -- | 0.747 | 8.89 | -- | -- | -- | -- |
| 918.56 | 1.41 | 6.62 | -- | -- | -1.63 | -- | -- | 0.619 | -- | 35.1 | 47520 | -- | -- |
| 1072.52 | 1.53 | 6.58 | -- | -- | -- | -- | -- | 0.771 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.58 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 2 | 228.65 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 21 |
| 5 | 228.88 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 6 | 228.95 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 19 | 229.98 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 25 | 230.36 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 27 | 230.40 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 37 | 230.97 | wind | 5 | 43200 | < th | dose dependent | rect. | 19 | 4 |
| 42 | 231.07 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 55 | 231.43 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 57 | 231.59 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 59 | 231.69 | wind | 3 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 76 | 232.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 79 | 232.24 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 81 | 232.26 | wind | 5 | 14400 | > th | dose independent | sin | 3 | NA |
| 84 | 232.33 | wind | 5 | 14400 | < th | dose independent | sin | 3 | NA |
| 93 | 232.48 | wind | 5 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 94 | 232.48 | wind | 5 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 101 | 232.67 | wind | 5 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 107 | 232.76 | wind | 5 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 108 | 232.81 | wind | 5 | 14400 | > th | dose independent | no | NA | NA |
| 117 | 232.92 | wind | 5 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 129 | 233.04 | wind | 5 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 130 | 233.04 | wind | 5 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 136 | 233.09 | wind | 5 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 138 | 233.15 | wind | 5 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 141 | 233.18 | wind | 5 | 14400 | < th | dose independent | no | NA | NA |
| 147 | 233.23 | wind | 5 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 179 | 233.49 | wind | 5 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 180 | 233.50 | wind | 5 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 181 | 233.51 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 204 | 233.64 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 216 | 233.74 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 235 | 233.92 | wind | 5 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 239 | 233.95 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 253 | 234.01 | radiation | 20 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 266 | 234.08 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 306 | 234.30 | wind | 3 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 342 | 234.61 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 428 | 234.89 | temperature | 25 | 14400 | > th | dose independent | rect. | 16 | 2 |
| 434 | 234.92 | temperature | 25 | 14400 | < th | dose independent | rect. | 9 | 9 |
| 440 | 234.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 451 | 234.99 | temperature | 25 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 458 | 235.01 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 467 | 235.03 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 504 | 235.12 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 514 | 235.16 | radiation | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 523 | 235.20 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 536 | 235.25 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 557 | 235.35 | wind | 1 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 608 | 235.45 | temperature | 25 | 14400 | > th | dose independent | sin | 23 | NA |
| 627 | 235.51 | wind | 7 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 630 | 235.53 | radiation | 20 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 647 | 235.56 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 687 | 235.68 | temperature | 25 | 14400 | < th | dose independent | sin | 23 | NA |
| 693 | 235.69 | wind | 5 | 14400 | > th | dose dependent | sin | 4 | NA |
| 707 | 235.73 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 714 | 235.74 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 723 | 235.75 | humidity | 70 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 741 | 235.79 | wind | 3 | 14400 | > th | dose dependent | rect. | 7 | 8 |
| 749 | 235.81 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 754 | 235.82 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 755 | 235.82 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 761 | 235.82 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 762 | 235.83 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 765 | 235.84 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 822 | 235.98 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 854 | 236.04 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 871 | 236.05 | wind | 5 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 873 | 236.06 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 881 | 236.07 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 884 | 236.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 20 |
| 909 | 236.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 922 | 236.10 | radiation | 10 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 947 | 236.14 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 956 | 236.14 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 23 |