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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0260500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glucose/ribitol dehydrogenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.0264) R2 : 0.363
β1 : -0.522 (0.0964) R2dD : 0.043 R2D : -0.0191
β2 : -- (--) R2dC : -- R2C : --
β3 : 14.8 (1.09) R2dE : 3.79 R2E : -2.45
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -43.3 (3.78) R2dD*E : 2.74 R2D*E : -3.4
γ1 : -0.00112 (0.0554) R2dN8 : -1.45e-05 R2N8 : -0.0133
σ : 0.484
deviance : 107.81
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_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.1003
memory length : 293
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.98
open length of G : 1.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.79 0.469 3.23 -0.527 0.307 14.7 -1.06 -43 -0.00415 4.11 0.09261 291 1.98 1.59
142.9 0.557 3.15 -0.0246 0.363 2.74 -0.227 -- 0.0764 1.63 0.4956 271 2.1 10.6
102.88 0.472 3.24 -0.524 0.308 14.5 -- -43.1 -0.00674 4 0.09336 292 1.98 1.6
137.44 0.546 3.17 -0.325 0.403 2.92 -- -- -0.0452 4.34 0.197 270 1.95 11.1
107.81 0.484 3.23 -0.522 -- 14.8 -- -43.3 -0.00112 -- 0.1003 293 1.98 1.6
149.64 0.573 3.18 -0.275 0.489 -- -1.46 -- -0.0828 4.62 -- -- -- --
155.27 0.584 3.17 -0.266 0.48 -- -- -- -0.0751 4.72 -- -- -- --
146.37 0.563 3.17 -0.296 -- 3.05 -- -- -0.0318 -- 0.1721 270 1.93 11.1
139.93 0.551 3.16 -- 0.406 2.78 -- -- -0.0109 4.35 0.2818 270 1.94 11.1
167.5 0.605 3.18 -0.248 -- -- -- -- -0.0626 -- -- -- -- --
157.13 0.586 3.17 -- 0.475 -- -- -- -0.0455 4.73 -- -- -- --
148.67 0.568 3.16 -- -- 3 -- -- 0.000481 -- 0.2911 270 1.94 11.1
169.12 0.607 3.17 -- -- -- -- -- -0.0351 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.64 precipitation 0.1 270 > th dose independent rect. 2 2
2 104.03 precipitation 0.1 270 > th dose dependent rect. 2 2
3 108.24 radiation 1.0 1440 < th dose independent rect. 11 1
4 108.24 radiation 1.0 1440 < th dose dependent rect. 11 1
17 115.13 humidity 90.0 720 > th dose dependent rect. 20 1
22 117.99 humidity 90.0 720 > th dose dependent rect. 20 3
23 118.21 radiation 1.0 1440 > th dose independent rect. 9 6
24 118.22 radiation 1.0 1440 < th dose independent rect. 13 2
25 118.22 radiation 1.0 1440 < th dose dependent rect. 13 2
30 118.27 radiation 1.0 1440 > th dose independent rect. 11 4
31 118.37 radiation 1.0 1440 > th dose independent rect. 13 2
58 119.41 wind 1.0 1440 > th dose independent rect. 23 1
88 120.15 wind 1.0 720 < th dose independent rect. 23 1
145 122.72 atmosphere 1005.0 720 > th dose independent rect. 19 6
178 123.42 atmosphere 1005.0 720 < th dose independent rect. 19 6
182 123.91 atmosphere 1005.0 10 < th dose dependent rect. 24 9
202 124.49 atmosphere 1005.0 720 < th dose independent rect. 21 2
205 124.65 radiation 1.0 1440 > th dose independent rect. 9 1
206 124.66 wind 1.0 90 < th dose independent rect. 23 5
210 124.79 precipitation 0.1 270 > th dose independent sin 9 NA
216 125.05 precipitation 0.1 270 < th dose independent sin 9 NA
217 125.05 precipitation 0.1 270 < th dose dependent sin 9 NA
237 125.78 precipitation 0.1 270 > th dose dependent sin 8 NA
281 126.79 wind 1.0 270 < th dose independent rect. 3 1
297 127.12 wind 1.0 30 < th dose independent rect. 12 16
333 127.57 wind 1.0 720 < th dose dependent rect. 23 1
371 128.45 wind 1.0 30 < th dose independent rect. 7 21
386 128.71 wind 1.0 720 > th dose independent rect. 17 8
395 128.83 humidity 60.0 14400 > th dose independent rect. 7 1
428 129.19 humidity 60.0 14400 < th dose independent rect. 6 1
430 129.19 humidity 60.0 14400 < th dose independent rect. 20 1
432 129.19 radiation 20.0 14400 > th dose independent rect. 17 1
483 129.19 humidity 60.0 14400 < th dose dependent rect. 6 1
485 129.19 humidity 60.0 14400 < th dose dependent rect. 20 1
487 129.19 radiation 20.0 14400 > th dose dependent rect. 17 1
545 129.32 wind 1.0 270 < th dose dependent rect. 23 3
563 129.63 wind 1.0 10 < th dose independent rect. 2 3
568 129.67 humidity 90.0 30 > th dose independent rect. 24 9
622 130.29 temperature 20.0 10 > th dose independent rect. 2 2
625 130.36 wind 7.0 4320 > th dose independent rect. 17 1
633 130.46 wind 1.0 270 < th dose independent rect. 1 1
681 130.81 radiation 20.0 1440 < th dose dependent rect. 11 2
701 130.94 radiation 10.0 1440 < th dose dependent rect. 11 11
709 130.98 radiation 10.0 1440 < th dose dependent rect. 11 17
748 131.22 wind 7.0 4320 < th dose independent rect. 17 1
758 131.28 atmosphere 1005.0 270 < th dose dependent rect. 1 1
772 131.38 humidity 60.0 14400 > th dose independent rect. 23 9
783 131.50 humidity 60.0 14400 > th dose independent rect. 20 12
789 131.62 wind 1.0 90 > th dose independent rect. 3 23
795 131.68 radiation 10.0 1440 < th dose dependent sin 19 NA
800 131.70 wind 1.0 30 > th dose independent sin 16 NA
814 131.75 atmosphere 1005.0 720 < th dose independent sin 14 NA
834 131.88 atmosphere 1005.0 720 > th dose independent sin 14 NA
940 132.26 wind 1.0 10 < th dose dependent rect. 2 2
963 132.37 temperature 25.0 10 < th dose independent rect. 24 9
974 132.47 humidity 60.0 14400 > th dose independent rect. 5 3
997 132.59 humidity 90.0 10 < th dose independent sin 7 NA