Os12g0259800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os12g0259800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 226.62 | 0.707 | 2.87 | 0.528 | 0.214 | 1.2 | 1.66 | 6.78 | -0.128 | 4.81 | 1006 | 23 | 12.3 | 8.97 |
| 237.51 | 0.723 | 2.83 | 0.3 | 0.101 | 4.06 | 0.723 | -- | -0.041 | 4.12 | 1008 | 16 | 12.1 | 8.77 |
| 230.27 | 0.707 | 2.88 | 0.5 | 0.26 | 1.47 | -- | 6.61 | -0.159 | 6.19 | 1006 | 8 | 12.9 | 8.91 |
| 234.29 | 0.713 | 2.85 | 0.294 | 0.0841 | 4.7 | -- | -- | -0.0827 | 5.27 | 1008 | 19 | 12.1 | 8.63 |
| 231.98 | 0.709 | 2.88 | 0.507 | -- | 1.42 | -- | 7.65 | -0.152 | -- | 1007 | 8 | 12.8 | 9.12 |
| 263.94 | 0.762 | 2.83 | 0.377 | 0.03 | -- | -0.562 | -- | -0.00469 | 13.7 | -- | -- | -- | -- |
| 265.13 | 0.763 | 2.83 | 0.359 | 0.0422 | -- | -- | -- | -0.0084 | 10.4 | -- | -- | -- | -- |
| 234.74 | 0.714 | 2.84 | 0.3 | -- | 4.63 | -- | -- | -0.0617 | -- | 1008 | 21 | 12.1 | 8.65 |
| 235.79 | 0.715 | 2.84 | -- | 0.139 | 4.76 | -- | -- | -0.0885 | 6.56 | 1008 | 28 | 12.2 | 8.47 |
| 265.24 | 0.761 | 2.83 | 0.358 | -- | -- | -- | -- | -0.00855 | -- | -- | -- | -- | -- |
| 268.52 | 0.767 | 2.84 | -- | 0.0407 | -- | -- | -- | -0.0483 | 9.77 | -- | -- | -- | -- |
| 236.62 | 0.716 | 2.84 | -- | -- | 4.74 | -- | -- | -0.0776 | -- | 1008 | 32 | 12.2 | 8.38 |
| 268.62 | 0.765 | 2.84 | -- | -- | -- | -- | -- | -0.0483 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.55 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 12 | 9 |
| 3 | 232.21 | temperature | 20 | 30 | < th | dose dependent | rect. | 2 | 19 |
| 14 | 234.67 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 16 | 5 |
| 22 | 235.80 | temperature | 20 | 30 | < th | dose dependent | rect. | 2 | 4 |
| 40 | 236.39 | temperature | 20 | 10 | < th | dose dependent | sin | 1 | NA |
| 80 | 236.75 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 19 |
| 92 | 237.17 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 15 |
| 95 | 237.53 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 19 | 2 |
| 211 | 240.80 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 10 |
| 224 | 241.21 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 10 |
| 227 | 241.21 | temperature | 20 | 90 | < th | dose dependent | rect. | 8 | 12 |
| 235 | 241.31 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 10 |
| 240 | 241.31 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 7 |
| 241 | 241.36 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 6 |
| 248 | 241.40 | temperature | 20 | 90 | < th | dose dependent | rect. | 15 | 4 |
| 251 | 241.44 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 2 |
| 253 | 241.44 | temperature | 20 | 90 | < th | dose dependent | rect. | 17 | 2 |
| 255 | 241.45 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 3 |
| 260 | 241.46 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 3 |
| 265 | 241.47 | wind | 7 | 10 | > th | dose independent | rect. | 19 | 1 |
| 268 | 241.47 | wind | 7 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 349 | 242.58 | wind | 7 | 10 | < th | dose independent | sin | 10 | NA |
| 382 | 243.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 12 | 9 |
| 516 | 245.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 21 |
| 532 | 245.42 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 5 |
| 549 | 245.74 | humidity | 70 | 90 | > th | dose independent | rect. | 12 | 9 |
| 563 | 245.95 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 15 |
| 587 | 246.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 12 | 18 |
| 651 | 246.69 | humidity | 60 | 10 | < th | dose independent | rect. | 9 | 1 |
| 683 | 246.70 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 725 | 246.79 | temperature | 20 | 90 | < th | dose independent | sin | 23 | NA |
| 750 | 247.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 751 | 247.08 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 12 | 9 |
| 755 | 247.14 | temperature | 20 | 90 | > th | dose independent | sin | 23 | NA |
| 775 | 247.27 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 816 | 247.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 830 | 247.49 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 15 |
| 843 | 247.59 | temperature | 10 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 859 | 247.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 21 |
| 898 | 247.91 | wind | 5 | 90 | > th | dose dependent | rect. | 18 | 2 |
| 952 | 248.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 13 |
| 961 | 248.24 | radiation | 10 | 90 | < th | dose dependent | rect. | 17 | 22 |
| 964 | 248.26 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 12 |
| 975 | 248.29 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 999 | 248.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 1000 | 248.42 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 6 |