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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0257600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0548) R2 : 0.292
β1 : 0.849 (0.224) R2dD : 0.0308 R2D : 0.0328
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.8 (0.304) R2dE : 0.495 R2E : -0.189
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.17 (0.856) R2dD*E : 0.342 R2D*E : -0.143
γ1 : 0.0115 (0.116) R2dN8 : 4.58e-05 R2N8 : -0.0184
σ : 0.949
deviance : 415.28
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.046
memory length : 4321
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 1.24

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
412.7 0.954 3.42 0.945 0.105 -3.97 0.924 -8.38 0.0361 1.17 1.001 4320 15 1.23
472.38 1.01 3.43 1.21 0.181 -1.95 0.934 -- -0.0638 1.39 1.83 4328 15 1.08
414.82 0.949 3.42 0.854 0.107 -3.87 -- -8.18 0.00445 23.8 1.04 4322 15 1.24
472.58 1.01 3.42 1.27 0.232 -1.91 -- -- -0.0473 22.9 1.83 4325 15 1.02
415.28 0.949 3.42 0.849 -- -3.8 -- -8.17 0.0115 -- 1.046 4321 15 1.24
549.24 1.1 3.3 1.04 0.135 -- 1.08 -- -0.13 0.852 -- -- -- --
554.03 1.1 3.3 1.01 0.139 -- -- -- -0.134 23.5 -- -- -- --
473.77 1.01 3.32 1.25 -- -2.71 -- -- 0.276 -- 1.846 4332 15.1 0.925
485.58 1.03 3.32 -- 0.223 -1.7 -- -- -0.06 22.8 2.884 8650 15.4 1.35
555.25 1.1 3.3 1.01 -- -- -- -- -0.133 -- -- -- -- --
580.69 1.13 3.33 -- 0.151 -- -- -- -0.246 23.9 -- -- -- --
451.51 0.99 3.32 -- -- -2.12 -- -- 0.0875 -- 3.981 38879 15.9 2.02
582.13 1.13 3.33 -- -- -- -- -- -0.245 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 403.51 humidity 80.0 43200 < th dose independent rect. 17 1
3 403.91 humidity 80.0 43200 > th dose independent rect. 17 2
4 403.92 humidity 50.0 43200 < th dose independent rect. 13 1
7 405.07 radiation 10.0 43200 < th dose dependent rect. 16 1
9 405.74 humidity 50.0 43200 > th dose independent rect. 13 1
10 405.74 atmosphere 1010.0 14400 > th dose independent rect. 15 1
12 406.24 humidity 50.0 43200 < th dose dependent rect. 13 2
15 406.60 humidity 50.0 43200 > th dose independent rect. 11 3
16 406.63 humidity 50.0 43200 < th dose independent rect. 11 4
19 406.72 radiation 10.0 43200 < th dose dependent rect. 16 13
20 406.73 radiation 10.0 43200 < th dose dependent rect. 16 7
36 407.28 radiation 1.0 14400 > th dose independent rect. 15 1
46 407.40 radiation 1.0 14400 < th dose independent rect. 15 1
55 407.52 radiation 1.0 43200 < th dose independent rect. 17 1
56 407.59 radiation 40.0 43200 < th dose dependent rect. 16 8
61 407.64 radiation 40.0 43200 < th dose dependent rect. 16 3
64 407.64 radiation 40.0 43200 < th dose dependent rect. 16 13
78 407.68 radiation 1.0 43200 > th dose dependent rect. 16 1
80 407.70 radiation 1.0 43200 > th dose dependent rect. 16 3
106 407.80 radiation 40.0 43200 < th dose dependent rect. 16 1
111 407.86 humidity 50.0 43200 < th dose independent rect. 19 20
118 407.94 humidity 50.0 43200 < th dose independent rect. 3 12
126 408.04 humidity 60.0 43200 > th dose independent rect. 8 1
132 408.22 humidity 50.0 43200 > th dose independent rect. 1 13
140 408.28 precipitation 0.1 43200 > th dose independent rect. 22 2
143 408.28 humidity 50.0 43200 > th dose independent rect. 19 19
145 408.28 precipitation 0.1 43200 > th dose dependent rect. 22 2
202 408.60 wind 1.0 43200 > th dose independent rect. 21 2
212 408.69 radiation 1.0 43200 < th dose independent rect. 17 13
227 408.86 atmosphere 1015.0 43200 > th dose independent rect. 23 1
228 408.86 precipitation 0.1 43200 < th dose independent rect. 22 2
235 408.86 precipitation 0.1 43200 < th dose dependent rect. 22 2
243 409.02 atmosphere 1015.0 43200 < th dose independent rect. 23 1
248 409.05 radiation 1.0 43200 < th dose independent rect. 17 6
294 409.56 radiation 10.0 43200 < th dose dependent sin 15 NA
309 409.81 wind 1.0 43200 < th dose independent rect. 21 2
351 410.21 radiation 1.0 43200 > th dose independent rect. 17 1
354 410.28 atmosphere 1010.0 14400 < th dose independent rect. 15 1
385 410.68 radiation 1.0 43200 > th dose independent rect. 17 13
478 411.77 humidity 50.0 43200 > th dose independent sin 6 NA
483 411.81 radiation 1.0 43200 < th dose independent sin 14 NA
531 412.03 humidity 60.0 43200 < th dose independent rect. 8 1
534 412.05 wind 1.0 43200 < th dose dependent rect. 20 3
599 412.66 humidity 50.0 43200 < th dose independent sin 6 NA
674 413.06 atmosphere 1010.0 43200 > th dose dependent rect. 16 1
684 413.16 radiation 1.0 43200 < th dose independent rect. 10 20
688 413.23 atmosphere 1010.0 43200 > th dose dependent rect. 16 3
710 413.39 atmosphere 1010.0 43200 > th dose dependent rect. 18 1
718 413.44 radiation 1.0 43200 < th dose dependent rect. 4 2
722 413.47 radiation 1.0 43200 < th dose dependent rect. 22 8
726 413.49 radiation 1.0 43200 < th dose dependent rect. 19 11
736 413.54 atmosphere 1010.0 14400 > th dose dependent rect. 11 2
785 413.88 radiation 1.0 43200 > th dose independent sin 13 NA
964 414.86 wind 1.0 43200 < th dose dependent rect. 22 1
973 414.95 radiation 1.0 43200 > th dose independent rect. 10 20