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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0257400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0317) R2 : 0.175
β1 : -0.189 (0.119) R2dD : 0.0048 R2D : -0.0197
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.78 (0.575) R2dE : 0.299 R2E : -0.212
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -45.4 (4.97) R2dD*E : 0.375 R2D*E : -0.146
γ1 : -0.176 (0.0676) R2dN8 : 0.0155 R2N8 : 0.0159
σ : 0.592
deviance : 161.37
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 73.01
memory length : 34
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.6
open length of G : 2.91

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
161.48 0.597 2.96 -0.252 0.0238 2.48 -0.246 -24.7 -0.177 2.19 74.99 30 18.9 2.74
186.09 0.64 2.93 0.0257 0.0271 1.44 0.62 -- -0.185 8.73 75.83 39 19.9 3.34
161.37 0.596 2.99 -0.482 0.0279 4.17 -- -42.4 -0.178 4.35 74.99 30 18.9 2.74
186.07 0.639 2.93 0.0513 0.0418 1.97 -- -- -0.186 5.35 75 37 20 3.48
161.37 0.592 2.95 -0.189 -- 4.78 -- -45.4 -0.176 -- 73.01 34 19.6 2.91
191.06 0.648 2.94 0.0312 0.0213 -- -0.564 -- -0.199 21.1 -- -- -- --
192.15 0.649 2.94 0.0502 0.0284 -- -- -- -0.199 23.8 -- -- -- --
186.16 0.638 2.93 0.0527 -- 1.94 -- -- -0.185 -- 75 37 20 3.52
186.11 0.635 2.93 -- 0.0476 1.68 -- -- -0.185 5.97 75 37 20 3.5
192.2 0.648 2.94 0.051 -- -- -- -- -0.199 -- -- -- -- --
192.22 0.649 2.94 -- 0.029 -- -- -- -0.205 23.9 -- -- -- --
186.21 0.636 2.93 -- -- 1.65 -- -- -0.185 -- 75 37 20 3.5
192.27 0.647 2.94 -- -- -- -- -- -0.205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.37 humidity 80 30 < th dose dependent rect. 18 2
12 171.75 radiation 20 270 > th dose dependent rect. 16 15
22 172.50 humidity 80 90 < th dose dependent rect. 18 13
25 173.04 humidity 80 30 < th dose dependent rect. 19 11
30 173.13 humidity 80 30 < th dose dependent rect. 19 9
61 173.97 radiation 20 270 > th dose dependent rect. 16 1
88 176.59 humidity 80 30 < th dose dependent sin 12 NA
103 177.41 humidity 60 270 < th dose independent rect. 16 1
114 178.64 atmosphere 1005 90 < th dose independent rect. 18 1
140 179.21 humidity 80 10 < th dose independent rect. 19 1
149 179.38 humidity 60 270 < th dose dependent rect. 16 1
194 182.13 humidity 50 10 < th dose independent rect. 17 21
214 182.26 humidity 50 10 < th dose independent sin 8 NA
226 182.68 radiation 20 270 > th dose dependent rect. 15 17
239 182.97 humidity 50 10 < th dose dependent rect. 17 21
241 183.00 radiation 30 90 > th dose independent rect. 7 1
264 183.14 humidity 80 30 < th dose independent rect. 19 13
276 183.33 wind 3 14400 < th dose dependent rect. 11 1
282 183.37 atmosphere 1005 270 < th dose dependent rect. 16 1
283 183.39 radiation 30 90 > th dose dependent rect. 7 1
299 183.39 radiation 20 10 > th dose dependent rect. 15 18
302 183.41 radiation 1 10 < th dose independent rect. 5 1
324 183.49 humidity 50 10 < th dose dependent sin 8 NA
327 183.55 humidity 50 10 < th dose independent rect. 17 1
344 183.55 radiation 20 10 > th dose independent rect. 16 17
353 183.65 radiation 1 14400 < th dose dependent rect. 15 3
354 183.65 radiation 1 14400 < th dose dependent rect. 11 7
366 183.72 radiation 1 14400 < th dose independent rect. 16 1
374 183.75 radiation 1 14400 > th dose independent rect. 16 1
378 183.78 wind 1 43200 < th dose independent rect. 10 1
384 183.81 wind 1 14400 > th dose independent rect. 11 1
391 183.83 radiation 20 10 > th dose independent rect. 8 1
393 183.85 wind 3 14400 < th dose dependent rect. 11 3
394 183.87 wind 1 43200 < th dose independent rect. 9 5
395 183.87 radiation 1 14400 < th dose independent rect. 8 10
406 183.93 wind 1 14400 > th dose independent rect. 10 3
412 183.96 radiation 1 14400 < th dose independent rect. 15 3
413 183.96 wind 1 43200 > th dose independent rect. 9 5
415 183.96 radiation 1 14400 > th dose independent rect. 8 10
432 184.02 radiation 20 10 > th dose dependent rect. 8 1
454 184.07 wind 3 30 > th dose independent rect. 19 1
456 184.08 radiation 1 14400 > th dose independent rect. 15 3
458 184.09 radiation 1 14400 < th dose independent rect. 6 12
472 184.15 humidity 60 270 < th dose independent sin 12 NA
529 184.23 humidity 80 270 < th dose dependent rect. 15 5
538 184.26 radiation 1 14400 < th dose independent rect. 8 21
567 184.32 radiation 1 14400 < th dose independent sin 20 NA
596 184.32 radiation 1 14400 > th dose independent rect. 8 21
604 184.33 radiation 1 14400 < th dose independent rect. 15 14
620 184.34 radiation 1 14400 < th dose independent rect. 15 6
635 184.34 temperature 20 14400 < th dose dependent rect. 4 1
645 184.36 humidity 60 270 > th dose independent sin 12 NA
650 184.36 radiation 1 14400 < th dose independent rect. 6 23
651 184.36 radiation 40 720 > th dose dependent rect. 15 1
689 184.37 atmosphere 1005 270 < th dose dependent rect. 15 4
714 184.39 radiation 1 14400 > th dose independent sin 20 NA
721 184.39 radiation 1 14400 > th dose independent rect. 15 14
741 184.40 humidity 50 10 < th dose dependent rect. 17 1
934 184.48 wind 1 43200 > th dose independent rect. 9 14
959 184.49 humidity 70 10 < th dose independent rect. 7 1