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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0255600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0441) R2 : 0.0818
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.993 (0.165) R2dE : 0.0741 R2E : 0.0776
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.117 (0.0936) R2dN8 : 0.00418 R2N8 : 0.00765
σ : 0.827
deviance : 315.24
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999.7
memory length : 101
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
298.76 0.812 3.41 -2.08 0.179 6.73 -0.582 -32.4 -0.13 3.43 999.7 101 -- --
314.89 0.833 3.05 -0.062 0.214 0.91 -0.435 -- -0.134 3.1 999.7 101 -- --
299.82 0.806 3.41 -2.05 0.175 6.7 -- -32.2 -0.126 3.38 999.7 101 -- --
312.82 0.824 3.05 -0.0627 0.202 1.01 -- -- -0.128 2.91 999.7 101 -- --
301.57 0.809 3.41 -2.05 -- 6.72 -- -32.3 -0.121 -- 999.7 101 -- --
336.95 0.861 3.07 0.096 0.19 -- -0.522 -- -0.193 3.29 -- -- -- --
337.81 0.861 3.07 0.106 0.187 -- -- -- -0.19 3.07 -- -- -- --
315.17 0.827 3.05 -0.0529 -- 1 -- -- -0.122 -- 999.7 101 -- --
312.92 0.824 3.05 -- 0.2 0.999 -- -- -0.122 2.98 999.7 101 -- --
339.82 0.861 3.06 0.114 -- -- -- -- -0.185 -- -- -- -- --
338.11 0.86 3.07 -- 0.189 -- -- -- -0.202 3.07 -- -- -- --
315.24 0.827 3.05 -- -- 0.993 -- -- -0.117 -- 999.7 101 -- --
340.16 0.861 3.07 -- -- -- -- -- -0.198 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 297.34 atmosphere 1000 90 < th dose independent rect. 10 22
5 298.12 temperature 30 14400 < th dose independent rect. 5 4
6 298.23 temperature 30 14400 > th dose dependent rect. 8 1
20 298.34 temperature 30 14400 > th dose independent rect. 8 1
35 298.38 temperature 30 14400 < th dose independent rect. 20 13
38 298.45 temperature 30 14400 < th dose independent rect. 22 11
40 298.47 temperature 30 14400 < th dose independent rect. 1 8
48 299.38 atmosphere 1000 90 < th dose independent rect. 22 23
49 299.46 atmosphere 1000 90 < th dose independent rect. 22 19
52 299.56 atmosphere 1000 90 < th dose independent rect. 19 22
53 299.88 atmosphere 1000 90 < th dose independent rect. 17 23
59 300.11 atmosphere 1000 90 < th dose independent rect. 5 23
69 300.69 atmosphere 1000 90 < th dose independent no NA NA
70 300.79 atmosphere 1000 90 < th dose independent rect. 3 23
73 300.85 atmosphere 1000 90 < th dose independent rect. 1 23
74 300.87 atmosphere 1000 90 < th dose independent rect. 13 23
84 301.31 atmosphere 1000 90 > th dose independent no NA NA
101 302.23 atmosphere 1000 10 < th dose independent rect. 14 19
121 302.82 temperature 25 4320 < th dose independent rect. 19 1
134 303.08 atmosphere 1000 10 < th dose independent rect. 22 11
148 303.46 atmosphere 1000 10 < th dose independent rect. 14 22
154 303.56 temperature 25 4320 > th dose independent rect. 19 1
203 304.42 wind 9 14400 > th dose dependent rect. 13 1
228 304.78 atmosphere 1000 90 < th dose independent sin 12 NA
239 304.94 temperature 25 1440 > th dose independent rect. 7 1
248 305.04 atmosphere 1000 90 > th dose independent sin 12 NA
249 305.04 atmosphere 1000 10 > th dose independent no NA NA
253 305.06 atmosphere 1000 90 < th dose independent rect. 17 15
276 305.37 humidity 50 14400 < th dose independent rect. 17 1
289 305.37 atmosphere 1000 90 < th dose independent rect. 19 13
295 305.39 radiation 20 4320 > th dose independent rect. 15 1
316 305.75 temperature 25 1440 < th dose independent rect. 7 1
322 305.81 radiation 20 4320 < th dose independent rect. 15 1
326 305.83 atmosphere 1000 720 < th dose independent rect. 21 2
338 306.06 atmosphere 1000 90 > th dose independent rect. 3 23
380 306.49 atmosphere 1000 90 < th dose independent rect. 22 15
460 306.85 wind 1 14400 < th dose dependent rect. 2 1
466 306.90 humidity 50 14400 > th dose independent rect. 17 1
467 306.91 atmosphere 1000 10 > th dose independent sin 10 NA
470 306.93 humidity 50 14400 < th dose dependent rect. 17 1
485 306.94 atmosphere 1000 10 < th dose independent sin 10 NA
524 307.09 wind 9 14400 > th dose independent rect. 13 1
544 307.19 temperature 30 1440 < th dose independent rect. 3 10
547 307.20 temperature 30 1440 < th dose independent rect. 8 5
559 307.29 temperature 30 1440 < th dose independent rect. 10 3
563 307.32 temperature 30 1440 < th dose independent rect. 19 18
579 307.40 atmosphere 1000 10 < th dose independent rect. 22 14
583 307.43 temperature 25 4320 > th dose independent rect. 18 8
584 307.43 temperature 30 1440 < th dose independent rect. 23 14
614 307.60 humidity 50 14400 > th dose independent rect. 16 5
615 307.60 humidity 50 14400 > th dose independent rect. 16 7
619 307.61 humidity 50 14400 > th dose independent rect. 16 16
633 307.65 humidity 50 14400 > th dose independent rect. 16 14
638 307.65 radiation 40 14400 > th dose dependent rect. 12 1
644 307.69 temperature 30 1440 > th dose independent rect. 10 3
649 307.70 humidity 50 14400 > th dose independent rect. 16 10
675 307.81 wind 9 14400 > th dose dependent rect. 15 1
676 307.82 atmosphere 1000 10 < th dose independent rect. 18 15
712 308.01 atmosphere 1000 10 < th dose independent rect. 20 13
722 308.08 temperature 30 1440 > th dose independent rect. 12 1
803 308.31 temperature 30 14400 > th dose dependent rect. 18 1
828 308.35 radiation 30 4320 < th dose dependent rect. 15 1
871 308.53 radiation 20 4320 < th dose independent rect. 15 6
872 308.53 radiation 20 4320 < th dose independent rect. 15 8
883 308.56 radiation 20 4320 < th dose independent rect. 15 4
885 308.56 radiation 20 4320 < th dose independent rect. 15 11
887 308.56 radiation 10 4320 > th dose dependent rect. 15 1
898 308.59 radiation 20 4320 < th dose independent rect. 15 15
935 308.72 wind 1 14400 > th dose independent rect. 2 1
956 308.80 wind 9 14400 > th dose independent rect. 15 1
966 308.85 wind 1 14400 < th dose independent rect. 10 2
979 308.89 atmosphere 1000 1440 > th dose independent rect. 22 1