Os12g0255000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os12g0255000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.15 | 0.661 | 8.7 | -0.532 | 2.23 | -0.883 | 2.57 | -2.22 | -1.37 | 17.5 | 21.2 | 505 | -- | -- |
| 211.23 | 0.677 | 8.64 | -0.00228 | 2.19 | -0.721 | 1.65 | -- | -1.25 | 17.4 | 21.4 | 429 | -- | -- |
| 207.98 | 0.672 | 8.69 | -0.532 | 2.17 | -0.837 | -- | -2.05 | -1.34 | 17.7 | 21.6 | 837 | -- | -- |
| 216.53 | 0.685 | 8.63 | -0.00464 | 2.23 | -0.71 | -- | -- | -1.22 | 17.5 | 21.8 | 485 | -- | -- |
| 435.94 | 0.972 | 8.68 | -0.891 | -- | -0.759 | -- | -2.67 | -1.46 | -- | 22 | 1326 | -- | -- |
| 233.65 | 0.717 | 8.68 | -0.251 | 2.1 | -- | 1.57 | -- | -1.44 | 17.4 | -- | -- | -- | -- |
| 239.71 | 0.725 | 8.67 | -0.255 | 2.11 | -- | -- | -- | -1.43 | 17.5 | -- | -- | -- | -- |
| 452.99 | 0.991 | 8.6 | -0.053 | -- | -0.677 | -- | -- | -1.27 | -- | 21.9 | 1156 | -- | -- |
| 216.52 | 0.685 | 8.63 | -- | 2.23 | -0.718 | -- | -- | -1.21 | 17.5 | 21.79 | 489 | -- | -- |
| 470.69 | 1.01 | 8.65 | -0.326 | -- | -- | -- | -- | -1.49 | -- | -- | -- | -- | -- |
| 241.43 | 0.727 | 8.67 | -- | 2.11 | -- | -- | -- | -1.41 | 17.4 | -- | -- | -- | -- |
| 453.1 | 0.991 | 8.6 | -- | -- | -0.696 | -- | -- | -1.27 | -- | 21.9 | 1157 | -- | -- |
| 473.48 | 1.02 | 8.64 | -- | -- | -- | -- | -- | -1.45 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 181.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 3 | 182.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 4 | 182.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 5 | 185.13 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 6 | 185.35 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 7 | 185.69 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 14 | 186.57 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 6 |
| 15 | 186.58 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 4 |
| 17 | 186.69 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 18 | 186.74 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 19 | 186.74 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 5 |
| 28 | 187.00 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 29 | 187.04 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 39 | 187.68 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 41 | 187.72 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 42 | 187.73 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 45 | 187.79 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 48 | 187.93 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 52 | 188.01 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 59 | 188.32 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 61 | 188.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 64 | 188.37 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 65 | 188.40 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 68 | 188.45 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 69 | 188.46 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 71 | 188.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 72 | 188.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 73 | 188.55 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 74 | 188.55 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 92 | 188.90 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 96 | 188.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 97 | 188.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 106 | 189.06 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 116 | 189.17 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 15 |
| 145 | 189.58 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 146 | 189.59 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 14 |
| 147 | 189.59 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 14 |
| 149 | 189.61 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 167 | 189.80 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 10 |
| 169 | 189.80 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 10 |
| 185 | 189.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 10 |
| 195 | 190.05 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 10 |
| 197 | 190.11 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 220 | 190.42 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 234 | 190.57 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 14 |
| 240 | 190.62 | wind | 3.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 306 | 191.06 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 329 | 191.18 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 5 |
| 335 | 191.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 345 | 191.30 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 346 | 191.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 347 | 191.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 359 | 191.41 | wind | 3.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 360 | 191.41 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 10 |
| 364 | 191.43 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 400 | 191.67 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 3 |
| 422 | 191.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 431 | 191.98 | wind | 3.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 447 | 192.06 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 455 | 192.10 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 468 | 192.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 10 |
| 504 | 192.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 505 | 192.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 511 | 192.49 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 538 | 192.71 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 541 | 192.76 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 570 | 193.01 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 594 | 193.12 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 10 |
| 595 | 193.12 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 606 | 193.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 10 |
| 665 | 193.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 671 | 193.61 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 757 | 194.26 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 769 | 194.32 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 771 | 194.32 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 824 | 194.58 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 852 | 194.72 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 858 | 194.74 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 872 | 194.78 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 3 |
| 891 | 194.85 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 919 | 195.03 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 930 | 195.06 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 974 | 195.30 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |