Os12g0252000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0252000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.34 | 0.411 | 8.8 | 1.71 | 0.501 | 1.53 | 0.0866 | -1.8 | 0.0809 | 11.4 | 31.46 | 257 | -- | -- |
| 78.98 | 0.414 | 8.83 | 1.43 | 0.642 | 1.56 | 0.289 | -- | 0.0104 | 11.5 | 30.88 | 139 | -- | -- |
| 76.29 | 0.407 | 8.81 | 1.7 | 0.515 | 1.53 | -- | -1.87 | 0.0693 | 11.4 | 31.78 | 236 | -- | -- |
| 79.33 | 0.415 | 8.83 | 1.42 | 0.624 | 1.52 | -- | -- | 0.0134 | 11.4 | 30.76 | 147 | -- | -- |
| 82.35 | 0.423 | 8.8 | 1.79 | -- | 1.66 | -- | -2.12 | 0.0729 | -- | 33.9 | 599 | -- | -- |
| 107.82 | 0.487 | 8.89 | 1.05 | 0.583 | -- | 0.0897 | -- | -0.265 | 8.23 | -- | -- | -- | -- |
| 107.84 | 0.486 | 8.89 | 1.05 | 0.583 | -- | -- | -- | -0.265 | 8.21 | -- | -- | -- | -- |
| 84.76 | 0.429 | 8.85 | 1.45 | -- | 1.63 | -- | -- | 0.0034 | -- | 32.3 | 601 | -- | -- |
| 126.54 | 0.524 | 8.89 | -- | 0.553 | 0.977 | -- | -- | -0.269 | 9.91 | 164.3 | 128 | -- | -- |
| 126.58 | 0.526 | 8.91 | 1.06 | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
| 137 | 0.548 | 8.92 | -- | 0.589 | -- | -- | -- | -0.382 | 8.08 | -- | -- | -- | -- |
| 134.93 | 0.541 | 8.9 | -- | -- | 1.12 | -- | -- | -0.241 | -- | 179.8 | 544 | -- | -- |
| 156.01 | 0.583 | 8.93 | -- | -- | -- | -- | -- | -0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.61 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 4 | 74.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 6 | 74.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 13 | 75.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 17 | 75.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 18 | 75.57 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 22 | 75.69 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 24 | 75.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 26 | 75.93 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 27 | 75.93 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 29 | 75.95 | radiation | 20 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 30 | 75.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 31 | 75.96 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 113 | 76.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 138 | 76.57 | temperature | 10 | 4320 | > th | dose dependent | sin | 18 | NA |
| 178 | 76.64 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 207 | 76.70 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 300 | 76.85 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 324 | 76.88 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 399 | 76.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 431 | 77.05 | radiation | 30 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 530 | 77.20 | temperature | 30 | 4320 | < th | dose dependent | sin | 17 | NA |
| 531 | 77.20 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 576 | 77.26 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 593 | 77.27 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 23 |
| 605 | 77.28 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 23 |
| 615 | 77.29 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 617 | 77.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 659 | 77.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 667 | 77.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 696 | 77.37 | temperature | 30 | 4320 | < th | dose dependent | rect. | 9 | 16 |
| 721 | 77.40 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 722 | 77.40 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 17 |
| 792 | 77.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 20 |
| 845 | 77.51 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 846 | 77.51 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 884 | 77.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 992 | 77.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 12 |