Os12g0250900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : BRCT domain containing protein.
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Os12g0250900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : BRCT domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.32 | 0.408 | 8.87 | 0.6 | 1.06 | -3.17 | 3.87 | -3.65 | -0.314 | 6.88 | 0.4971 | 725 | -- | -- |
| 77.56 | 0.41 | 8.88 | 0.6 | 0.751 | -2.84 | 1.71 | -- | -0.319 | 8.73 | 0.4224 | 786 | -- | -- |
| 84.52 | 0.428 | 8.9 | 0.539 | 0.619 | -2.59 | -- | 0.385 | -0.349 | 6.36 | 0.4991 | 691 | -- | -- |
| 84.72 | 0.429 | 8.9 | 0.596 | 0.656 | -2.63 | -- | -- | -0.339 | 6.15 | 0.49 | 683 | -- | -- |
| 86.36 | 0.433 | 8.9 | 0.654 | -- | -1.85 | -- | 0.301 | -0.305 | -- | 0.55 | 656 | -- | -- |
| 99.59 | 0.468 | 8.91 | 0.792 | 1.55 | -- | -0.0158 | -- | -0.23 | 17.1 | -- | -- | -- | -- |
| 99.59 | 0.467 | 8.91 | 0.792 | 1.55 | -- | -- | -- | -0.23 | 17.1 | -- | -- | -- | -- |
| 86.45 | 0.433 | 8.9 | 0.662 | -- | -1.84 | -- | -- | -0.305 | -- | 0.5 | 653 | -- | -- |
| 93.58 | 0.451 | 8.91 | -- | 0.791 | -2.74 | -- | -- | -0.4 | 5.55 | 0.49 | 671 | -- | -- |
| 225.47 | 0.702 | 8.9 | 0.737 | -- | -- | -- | -- | -0.269 | -- | -- | -- | -- | -- |
| 116.14 | 0.504 | 8.93 | -- | 1.54 | -- | -- | -- | -0.318 | 17.1 | -- | -- | -- | -- |
| 97.6 | 0.46 | 8.92 | -- | -- | -1.87 | -- | -- | -0.382 | -- | 0.4921 | 659 | -- | -- |
| 239.79 | 0.723 | 8.92 | -- | -- | -- | -- | -- | -0.351 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 5 | 65.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 7 | 65.86 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 8 | 66.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 9 | 66.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 10 | 66.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 25 | 66.50 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 63 | 67.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 80 | 67.72 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 170 | 69.18 | temperature | 25 | 30 | > th | dose independent | rect. | 6 | 14 |
| 207 | 69.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 217 | 69.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 243 | 69.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 255 | 70.07 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 369 | 71.03 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 8 |
| 424 | 71.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 432 | 71.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 446 | 71.55 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 567 | 72.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 591 | 72.41 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 755 | 73.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 769 | 73.33 | temperature | 25 | 90 | > th | dose independent | sin | 0 | NA |
| 863 | 73.83 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 912 | 74.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 984 | 74.38 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 5 |
| 990 | 74.38 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |