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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0249900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.87 (0.0473) R2 : 0.775
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.87 (0.14) R2dE : 0.216 R2E : 0.224
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.91 (0.101) R2dN8 : 0.551 R2N8 : 0.558
σ : 0.883
deviance : 359.53
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.31
memory length : 1320
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
343.97 0.871 3.98 -1.61 0.523 3.14 0.34 -5.69 2.86 5.71 25.72 1371 -- --
347.68 0.868 3.87 -0.168 0.464 2.86 0.4 -- 2.86 6.11 23.18 1318 -- --
344.23 0.864 3.98 -1.6 0.526 3.14 -- -5.69 2.87 5.77 25.8 1370 -- --
347.89 0.869 3.87 -0.176 0.458 2.88 -- -- 2.86 6.4 23.23 1320 -- --
356.47 0.879 3.98 -1.21 -- 3.3 -- -3.42 2.67 -- 23.86 1320 -- --
638.15 1.18 3.74 0.819 0.735 -- 0.857 -- 3.43 4.31 -- -- -- --
640.16 1.18 3.75 0.811 0.741 -- -- -- 3.43 4.38 -- -- -- --
358.85 0.882 3.88 -0.168 -- 2.91 -- -- 2.88 -- 23.3 1320 -- --
348.56 0.87 3.86 -- 0.461 2.83 -- -- 2.9 6.32 23.24 1319 -- --
669.68 1.21 3.75 0.841 -- -- -- -- 3.45 -- -- -- -- --
657.52 1.2 3.77 -- 0.757 -- -- -- 3.34 4.35 -- -- -- --
359.53 0.883 3.87 -- -- 2.87 -- -- 2.91 -- 23.31 1320 -- --
688.33 1.22 3.77 -- -- -- -- -- 3.35 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 342.13 temperature 25 1440 > th dose dependent rect. 15 21
13 344.40 temperature 25 1440 > th dose dependent rect. 6 17
76 346.48 temperature 25 1440 > th dose dependent no NA NA
131 348.28 temperature 25 1440 > th dose dependent sin 0 NA
143 348.75 temperature 25 1440 > th dose dependent rect. 16 6
166 349.60 temperature 25 1440 > th dose dependent rect. 17 2
254 353.51 temperature 20 1440 > th dose dependent rect. 6 2
269 354.30 temperature 20 1440 > th dose dependent rect. 5 4
354 358.04 radiation 1 1440 < th dose dependent rect. 18 11
434 360.62 radiation 1 14400 < th dose dependent rect. 18 1
455 360.96 radiation 1 14400 < th dose dependent rect. 18 5
472 361.19 temperature 25 1440 > th dose dependent rect. 10 3
523 362.08 radiation 1 1440 < th dose dependent rect. 18 9
529 362.16 radiation 1 1440 < th dose dependent rect. 18 7
562 362.88 radiation 1 1440 < th dose dependent rect. 18 2
601 363.52 radiation 1 14400 < th dose dependent rect. 18 11
620 363.94 temperature 30 1440 < th dose independent rect. 18 22
642 364.50 radiation 1 14400 < th dose dependent rect. 18 9
655 364.70 radiation 1 14400 > th dose independent rect. 18 1
678 364.91 temperature 30 1440 < th dose independent rect. 14 21
714 365.56 radiation 1 14400 < th dose independent rect. 18 9
731 365.84 radiation 1 14400 < th dose independent rect. 18 2
733 365.87 radiation 1 14400 < th dose independent rect. 18 5
764 366.31 temperature 30 1440 > th dose independent rect. 14 21
767 366.32 temperature 25 1440 > th dose independent rect. 6 1
774 366.48 temperature 30 1440 < th dose independent rect. 21 19
783 366.59 temperature 30 1440 < th dose independent rect. 24 16
784 366.60 temperature 30 1440 < th dose independent rect. 8 8
791 366.66 temperature 30 1440 < th dose independent rect. 5 11
829 367.28 temperature 30 1440 > th dose independent rect. 18 22
838 367.46 wind 7 43200 < th dose independent rect. 3 12
862 368.15 temperature 25 1440 < th dose independent rect. 6 1
874 368.37 wind 7 43200 < th dose independent rect. 5 9
876 368.40 wind 7 43200 < th dose independent rect. 24 15
893 368.69 wind 5 43200 > th dose dependent rect. 10 4
899 368.87 wind 7 43200 > th dose independent rect. 3 12
900 368.90 radiation 10 1440 < th dose dependent rect. 17 13
901 368.91 temperature 30 1440 < th dose independent rect. 8 22
902 368.92 temperature 30 1440 < th dose independent rect. 21 23
903 368.93 temperature 30 1440 < th dose independent rect. 8 20
912 368.96 temperature 30 1440 < th dose independent rect. 8 17
918 368.97 temperature 30 1440 < th dose independent rect. 5 23
920 368.97 temperature 30 1440 < th dose independent rect. 24 23
922 368.97 temperature 10 1440 > th dose dependent rect. 16 5
924 368.98 temperature 30 1440 < th dose independent rect. 8 15
927 368.99 temperature 30 1440 < th dose independent no NA NA
929 368.99 temperature 30 1440 < th dose independent rect. 24 20
931 368.99 temperature 30 1440 < th dose independent rect. 2 23
932 369.00 temperature 30 1440 < th dose independent rect. 8 12
934 369.00 temperature 30 1440 < th dose independent rect. 5 20
938 369.01 temperature 30 1440 < th dose independent rect. 2 21
948 369.02 temperature 30 1440 < th dose independent rect. 5 18
955 369.03 temperature 30 1440 < th dose independent rect. 2 18
965 369.04 temperature 30 1440 < th dose independent rect. 5 15
974 369.05 wind 5 43200 > th dose dependent rect. 3 12
982 369.06 temperature 30 1440 < th dose dependent rect. 6 3