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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0248700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.06 (0.0423) R2 : 0.507
β1 : -0.745 (0.159) R2dD : 0.0272 R2D : 0.044
β2 : 1.65 (0.11) R2dC : 0.278 R2C : 0.365
β3 : 1.55 (0.203) R2dE : 0.0879 R2E : 0.163
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.386 (0.0974) R2dN8 : 0.0277 R2N8 : 0.00517
σ : 0.774
deviance : 275.97
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_____
C
peak time of C : 3.23
E
wheather : temperature
threshold : 25.2
memory length : 76
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
269.01 0.771 5.03 -0.552 1.67 1.45 1.67 -1.12 0.424 3.24 25.12 76 -- --
270.77 0.766 5.05 -0.717 1.62 1.62 1.37 -- 0.41 3.3 25.2 76 -- --
276.26 0.774 5.05 -0.694 1.63 1.58 -- -0.181 0.404 3.16 25.1 86 -- --
275.97 0.774 5.06 -0.745 1.65 1.55 -- -- 0.386 3.23 25.2 76 -- --
373.74 0.9 5 -0.368 -- 2.73 -- 0.0806 0.638 -- 29.93 27 -- --
305.32 0.819 5.12 -1.09 1.94 -- 1.27 -- 0.082 3.07 -- -- -- --
310.66 0.825 5.13 -1.12 1.94 -- -- -- 0.0746 3.05 -- -- -- --
373.57 0.9 5.01 -0.41 -- 2.78 -- -- 0.64 -- 30.1 28 -- --
289.21 0.792 5.03 -- 1.6 1.84 -- -- 0.515 3.25 25.2 87 -- --
526.31 1.07 5.12 -1.04 -- -- -- -- 0.125 -- -- -- -- --
343.61 0.867 5.1 -- 1.92 -- -- -- 0.199 3.04 -- -- -- --
377.74 0.905 4.99 -- -- 2.88 -- -- 0.706 -- 30 29 -- --
554.59 1.1 5.1 -- -- -- -- -- 0.24 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 268.32 temperature 25 90 < th dose dependent rect. 11 23
2 268.34 temperature 25 90 < th dose dependent rect. 17 20
3 268.38 temperature 25 10 < th dose dependent rect. 3 23
25 268.65 temperature 20 270 > th dose independent rect. 6 21
33 268.91 temperature 20 10 > th dose independent rect. 11 16
35 269.03 temperature 20 90 > th dose independent rect. 19 23
38 269.26 temperature 25 90 < th dose dependent rect. 13 23
39 269.27 temperature 25 90 < th dose dependent no NA NA
46 269.40 temperature 25 30 < th dose dependent rect. 19 23
51 269.45 temperature 25 30 < th dose dependent rect. 23 23
53 269.48 temperature 25 10 < th dose dependent rect. 5 23
55 269.51 temperature 25 30 < th dose dependent rect. 7 23
56 269.52 temperature 25 30 < th dose dependent rect. 9 23
58 269.52 temperature 25 30 < th dose dependent rect. 21 23
61 269.57 temperature 25 30 < th dose dependent rect. 1 23
103 270.19 temperature 20 30 > th dose independent rect. 20 18
159 271.89 temperature 20 90 > th dose dependent rect. 19 8
162 272.06 temperature 20 30 > th dose independent rect. 20 20
163 272.11 radiation 40 30 < th dose independent rect. 3 23
193 273.23 temperature 20 30 > th dose independent no NA NA
217 273.78 temperature 20 30 > th dose independent rect. 20 7
245 274.18 humidity 50 30 > th dose dependent rect. 3 23
250 274.25 temperature 20 30 > th dose independent rect. 11 23
269 274.47 temperature 20 10 < th dose independent rect. 4 23
282 274.63 temperature 20 30 > th dose independent rect. 15 23
294 274.79 temperature 15 90 > th dose dependent sin 9 NA
306 274.90 temperature 20 30 > th dose independent rect. 13 23
312 274.92 temperature 25 90 < th dose dependent sin 9 NA
341 275.17 temperature 20 90 < th dose independent rect. 17 21
356 275.34 temperature 20 10 < th dose independent rect. 16 22
417 275.73 temperature 20 90 < th dose independent rect. 1 23
430 275.77 temperature 20 10 < th dose independent rect. 7 23
433 275.80 temperature 20 10 < th dose independent rect. 11 23
436 275.82 temperature 20 10 < th dose independent rect. 9 23
437 275.82 temperature 20 10 < th dose independent rect. 19 23
438 275.83 temperature 25 270 < th dose independent sin 12 NA
439 275.84 temperature 20 10 < th dose independent no NA NA
440 275.84 temperature 20 90 < th dose independent rect. 9 23
457 275.95 temperature 20 90 < th dose independent no NA NA
462 275.97 temperature 20 90 < th dose independent rect. 13 23
464 275.97 temperature 20 10 < th dose independent rect. 21 23
470 275.99 temperature 20 10 < th dose independent rect. 23 23
471 276.00 temperature 25 270 < th dose independent rect. 18 13
490 276.06 temperature 20 10 < th dose independent rect. 13 23
630 276.76 temperature 20 30 > th dose independent rect. 9 23
635 276.78 temperature 25 270 < th dose independent rect. 15 17
673 277.05 radiation 1 43200 < th dose dependent rect. 1 3
708 277.26 temperature 25 270 > th dose independent sin 11 NA
787 277.67 temperature 20 90 > th dose independent rect. 23 15
829 277.83 radiation 40 30 < th dose independent rect. 3 21
887 278.11 temperature 20 10 > th dose independent sin 14 NA
944 278.36 temperature 20 10 > th dose independent rect. 13 14