Os12g0246700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0246700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.57 | 0.442 | 2.93 | -0.191 | 0.232 | -0.248 | -0.264 | 0.469 | -0.013 | 12.5 | 20.68 | 96 | -- | -- |
| 89.07 | 0.44 | 2.94 | -0.184 | 0.239 | -0.236 | -0.0469 | -- | -0.0107 | 12.8 | 20.8 | 93 | -- | -- |
| 88.81 | 0.439 | 2.93 | -0.183 | 0.256 | -0.259 | -- | 0.402 | -0.02 | 12.5 | 20.7 | 95 | -- | -- |
| 89 | 0.439 | 2.94 | -0.19 | 0.25 | -0.258 | -- | -- | -0.0172 | 12.6 | 20.69 | 93 | -- | -- |
| 90.56 | 0.446 | 2.94 | -0.238 | -- | -0.0333 | -- | 0.352 | -0.0416 | -- | 20.7 | 95 | -- | -- |
| 90.9 | 0.447 | 2.95 | -0.228 | 0.0719 | -- | -0.0584 | -- | -0.0431 | 11.6 | -- | -- | -- | -- |
| 90.92 | 0.447 | 2.95 | -0.23 | 0.0723 | -- | -- | -- | -0.0432 | 12 | -- | -- | -- | -- |
| 90.56 | 0.443 | 2.95 | -0.25 | -- | -0.178 | -- | -- | -0.0512 | -- | 40.18 | 151 | -- | -- |
| 89.99 | 0.442 | 2.94 | -- | 0.25 | -0.269 | -- | -- | -0.00269 | 12.6 | 20.68 | 92 | -- | -- |
| 91.25 | 0.446 | 2.95 | -0.232 | -- | -- | -- | -- | -0.0442 | -- | -- | -- | -- | -- |
| 92.31 | 0.449 | 2.94 | -- | 0.0754 | -- | -- | -- | -0.0176 | 12.1 | -- | -- | -- | -- |
| 91.82 | 0.446 | 2.94 | -- | -- | -0.224 | -- | -- | -0.00224 | -- | 40.05 | 219 | -- | -- |
| 92.66 | 0.449 | 2.94 | -- | -- | -- | -- | -- | -0.0185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.73 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 17 | 1 |
| 8 | 71.73 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 76 | 82.79 | temperature | 30.0 | 90 | > th | dose independent | rect. | 16 | 1 |
| 81 | 84.20 | humidity | 80.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 85 | 84.36 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 1 |
| 86 | 84.36 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 93 | 84.92 | radiation | 10.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 119 | 84.92 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 145 | 84.93 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 3 |
| 150 | 85.18 | radiation | 20.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 162 | 85.26 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 169 | 85.37 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 6 |
| 176 | 85.50 | wind | 7.0 | 270 | > th | dose independent | rect. | 14 | 1 |
| 183 | 85.67 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 1 |
| 187 | 85.69 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 207 | 85.89 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 11 | 1 |
| 229 | 86.04 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 232 | 86.04 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 268 | 86.22 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 344 | 86.80 | wind | 1.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 351 | 86.84 | wind | 3.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 354 | 86.87 | wind | 7.0 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 356 | 86.88 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 370 | 87.01 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 3 |
| 377 | 87.06 | radiation | 1.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 382 | 87.06 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 393 | 87.14 | humidity | 80.0 | 90 | > th | dose independent | rect. | 10 | 5 |
| 402 | 87.19 | wind | 1.0 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 404 | 87.19 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 19 | 14 |
| 416 | 87.26 | humidity | 70.0 | 10 | > th | dose independent | rect. | 11 | 8 |
| 417 | 87.26 | radiation | 20.0 | 90 | < th | dose independent | rect. | 10 | 15 |
| 439 | 87.31 | humidity | 60.0 | 90 | < th | dose independent | rect. | 18 | 15 |
| 449 | 87.34 | humidity | 60.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 451 | 87.34 | radiation | 1.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 508 | 87.34 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 567 | 87.36 | wind | 1.0 | 10 | > th | dose independent | sin | 21 | NA |
| 615 | 87.38 | humidity | 60.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 694 | 87.38 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 776 | 87.39 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 784 | 87.41 | atmosphere | 1000.0 | 270 | < th | dose independent | sin | 20 | NA |
| 803 | 87.43 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 837 | 87.47 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 855 | 87.48 | wind | 1.0 | 10 | < th | dose independent | sin | 21 | NA |
| 863 | 87.50 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 885 | 87.51 | wind | 9.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 947 | 87.58 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 963 | 87.58 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 10 | 15 |
| 995 | 87.61 | atmosphere | 1000.0 | 270 | > th | dose independent | sin | 21 | NA |
| 1000 | 87.61 | humidity | 70.0 | 10 | > th | dose independent | rect. | 11 | 21 |