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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0245700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.4 (0.115) R2 : 0.126
β1 : -4.25 (0.81) R2dD : 0.465 R2D : -0.616
β2 : 0.675 (0.2) R2dC : 0.0223 R2C : -0.0844
β3 : 3.46 (0.513) R2dE : 0.347 R2E : -0.218
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -21.6 (3.98) R2dD*E : 0.577 R2D*E : -0.591
γ1 : -1.02 (0.218) R2dN8 : 0.102 R2N8 : -0.0781
σ : 1.42
deviance : 929.5
__
_____
C
peak time of C : 6.51
E
wheather : temperature
threshold : 25.75
memory length : 1206
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 5.25
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
929.36 1.43 4.4 -4.27 0.656 3.45 0.303 -21.6 -1.03 6.65 25.71 1206 5.37 --
977.05 1.46 4.08 -1.52 0.578 1.95 0.105 -- -0.856 6.49 -16.14 24921 3.92 --
929.5 1.42 4.4 -4.25 0.675 3.46 -- -21.6 -1.02 6.51 25.75 1206 5.25 --
975.91 1.45 4.08 -1.5 0.671 1.88 -- -- -0.867 6.01 0.8203 25378 7.02 --
949.06 1.43 4.42 -4.26 -- 3.61 -- -21.5 -1.14 -- 25.46 1153 5.63 --
1022.86 1.5 3.93 0.0998 0.839 -- -0.173 -- -0.216 5.74 -- -- -- --
1022.92 1.5 3.93 0.0991 0.838 -- -- -- -0.215 5.79 -- -- -- --
981.48 1.46 4.1 -1.56 -- 2.49 -- -- -0.911 -- -77.36 25525 9.4 --
973.73 1.45 4 -- 0.797 0.995 -- -- -0.496 6.02 26.6 8482 7.36 --
1059.34 1.52 3.94 0.125 -- -- -- -- -0.196 -- -- -- -- --
1023.18 1.5 3.93 -- 0.84 -- -- -- -0.226 5.79 -- -- -- --
1002.77 1.47 4.01 -- -- 1.08 -- -- -0.513 -- 26.5 8426 7.44 --
1059.76 1.52 3.95 -- -- -- -- -- -0.21 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 924.65 wind 7 14400 > th dose independent rect. 11 1
2 925.66 wind 7 14400 < th dose independent rect. 11 1
6 927.92 wind 7 14400 > th dose dependent rect. 5 8
9 928.65 wind 7 14400 > th dose dependent rect. 4 10
11 928.89 wind 7 14400 > th dose independent rect. 5 8
15 929.22 wind 7 14400 > th dose dependent rect. 23 15
19 929.60 wind 7 14400 > th dose dependent rect. 9 4
25 930.48 wind 7 14400 > th dose dependent rect. 10 2
30 930.82 wind 7 14400 < th dose independent rect. 5 8
49 933.25 wind 9 14400 < th dose independent rect. 22 16
55 933.68 temperature 25 1440 > th dose dependent rect. 19 4
57 933.92 wind 7 14400 > th dose independent rect. 23 15
73 934.75 wind 7 14400 > th dose dependent sin 5 NA
78 935.12 wind 9 14400 < th dose independent sin 6 NA
83 935.38 temperature 25 1440 > th dose dependent rect. 18 15
109 936.39 wind 1 43200 < th dose dependent rect. 24 2
114 936.48 wind 9 14400 < th dose independent rect. 19 19
117 936.57 temperature 25 1440 > th dose dependent rect. 18 10
128 936.89 radiation 40 43200 < th dose independent rect. 10 1
139 937.62 wind 9 14400 > th dose independent rect. 19 19
165 939.03 wind 9 14400 > th dose independent sin 6 NA
182 939.63 wind 1 43200 > th dose dependent rect. 12 1
183 939.68 wind 3 43200 > th dose independent rect. 11 1
185 939.76 temperature 30 43200 < th dose independent rect. 15 1
187 939.77 temperature 30 43200 > th dose independent rect. 15 1
199 940.08 temperature 25 1440 < th dose independent rect. 22 1
201 940.19 temperature 25 43200 < th dose independent rect. 21 1
203 940.28 temperature 25 43200 > th dose independent rect. 21 1
206 940.42 wind 9 43200 < th dose dependent rect. 12 1
207 940.44 temperature 25 1440 > th dose dependent sin 11 NA
209 940.53 wind 3 43200 < th dose independent rect. 11 1
234 941.10 temperature 25 43200 > th dose dependent rect. 17 2
236 941.13 radiation 40 43200 > th dose independent rect. 10 1
247 941.50 temperature 25 1440 > th dose independent rect. 21 2
258 941.73 temperature 30 43200 < th dose independent rect. 14 5
260 941.73 temperature 30 43200 < th dose independent rect. 14 8
266 941.76 temperature 30 43200 < th dose independent rect. 14 16
274 941.78 radiation 40 43200 < th dose independent rect. 15 21
288 941.99 temperature 30 43200 > th dose independent rect. 14 5
320 942.17 temperature 25 43200 > th dose independent rect. 19 4
337 942.31 radiation 40 43200 < th dose independent rect. 3 9
338 942.31 radiation 40 43200 < th dose independent rect. 1 11
339 942.31 radiation 40 43200 < th dose independent rect. 20 16
340 942.31 radiation 40 43200 < th dose independent rect. 18 18
346 942.33 radiation 40 43200 < th dose independent rect. 7 5
407 942.65 radiation 10 43200 < th dose independent rect. 6 1
425 942.68 radiation 10 43200 > th dose independent rect. 9 1
429 942.72 temperature 25 43200 > th dose dependent rect. 15 15
437 942.78 temperature 25 43200 < th dose independent rect. 7 1
472 942.92 temperature 25 43200 > th dose dependent sin 14 NA
489 943.00 temperature 25 43200 > th dose independent rect. 7 1
500 943.07 temperature 30 43200 < th dose independent sin 14 NA
502 943.08 temperature 25 43200 < th dose independent rect. 6 3
504 943.08 temperature 25 43200 > th dose dependent rect. 17 20
516 943.15 humidity 80 43200 < th dose dependent rect. 3 3
523 943.21 humidity 80 43200 < th dose dependent rect. 4 1
527 943.22 humidity 80 43200 < th dose dependent rect. 22 1
529 943.22 humidity 80 43200 < th dose dependent rect. 22 9
548 943.30 temperature 25 43200 > th dose independent rect. 5 4
553 943.31 temperature 30 43200 > th dose independent sin 14 NA
588 943.39 temperature 25 43200 < th dose independent rect. 18 17
628 943.49 temperature 25 43200 > th dose independent rect. 18 17
633 943.51 temperature 25 43200 > th dose dependent rect. 4 8
635 943.51 temperature 25 43200 > th dose dependent rect. 4 19
646 943.54 temperature 25 43200 < th dose independent rect. 17 15
649 943.54 temperature 25 43200 > th dose dependent rect. 7 4
691 943.62 radiation 40 43200 < th dose independent sin 8 NA
713 943.65 temperature 25 43200 > th dose dependent no NA NA
729 943.68 radiation 30 43200 > th dose dependent rect. 10 2
753 943.71 radiation 40 43200 < th dose independent rect. 10 22
778 943.75 temperature 25 43200 > th dose dependent rect. 21 23
789 943.77 wind 9 14400 > th dose dependent rect. 19 20
879 943.90 humidity 80 43200 < th dose dependent rect. 22 3
884 943.91 wind 3 43200 < th dose independent rect. 9 4
926 943.99 temperature 25 43200 > th dose dependent sin 7 NA
944 944.02 radiation 20 43200 < th dose independent rect. 8 1