Os12g0244700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os12g0244700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 212.17 | 0.678 | 4730 | -11300 | 0.029 | 2180000 | -0.558 | -5190000 | -0.0968 | 20.6 | 0.8004 | 20 | 8.01 | 1.54 |
| 4725040962246.09 | 101000 | 4730 | -11300 | 4900 | 2180000 | 1.5 | -- | 0.0867 | 19.9 | 0.8769 | 19 | 8 | 1.57 |
| 212.9 | 0.68 | 4730 | -11300 | 0.0496 | 2180000 | -- | -5190000 | -0.101 | 16.2 | 0.8499 | 23 | 8.01 | 1.55 |
| 4712743699909.86 | 101000 | 4730 | -11300 | 19800 | 2180000 | -- | -- | 0.0499 | 19.7 | 0.9994 | 19 | 8 | 1.73 |
| 213.03 | 0.68 | 4730 | -11300 | -- | 2180000 | -- | -5190000 | -0.102 | -- | 0.8492 | 23 | 8.01 | 1.55 |
| 242.73 | 0.73 | 2.85 | 0.0974 | 0.0339 | -- | 0.853 | -- | -0.109 | 8.69 | -- | -- | -- | -- |
| 245.07 | 0.733 | 2.85 | 0.127 | 0.0441 | -- | -- | -- | -0.108 | 12 | -- | -- | -- | -- |
| 213.03 | 0.683 | 2.85 | 0.04 | -- | 5.7 | -- | -- | -0.102 | -- | 0.8515 | 77 | 8.01 | 0.821 |
| 4729700535281.5 | 101000 | 4730 | -- | 20000 | 2180000 | -- | -- | 723 | 19.7 | 0.8566 | 118 | 8.02 | 0.0315 |
| 245.19 | 0.732 | 2.85 | 0.125 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 245.49 | 0.733 | 2.85 | -- | 0.0424 | -- | -- | -- | -0.122 | 11.8 | -- | -- | -- | -- |
| 213.07 | 0.682 | 2.85 | -- | -- | 5.71 | -- | -- | -0.106 | -- | 0.8536 | 69 | 8.01 | 0.82 |
| 245.6 | 0.731 | 2.86 | -- | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 212.91 | wind | 1 | 10 | < th | dose independent | rect. | 8 | 1 |
| 3 | 212.91 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 6 | 218.13 | wind | 1 | 90 | < th | dose independent | rect. | 6 | 4 |
| 7 | 219.45 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 11 | 221.34 | wind | 5 | 10 | > th | dose independent | rect. | 1 | 7 |
| 12 | 221.34 | wind | 5 | 30 | > th | dose dependent | rect. | 1 | 7 |
| 14 | 221.83 | wind | 9 | 270 | > th | dose independent | rect. | 19 | 3 |
| 18 | 221.84 | wind | 9 | 270 | > th | dose dependent | rect. | 19 | 3 |
| 19 | 221.85 | wind | 9 | 270 | > th | dose independent | rect. | 21 | 1 |
| 21 | 221.85 | wind | 9 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 63 | 221.89 | wind | 5 | 90 | > th | dose dependent | rect. | 24 | 1 |
| 79 | 221.90 | wind | 9 | 30 | > th | dose independent | rect. | 1 | 10 |
| 97 | 221.90 | wind | 9 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 116 | 221.93 | wind | 5 | 90 | > th | dose independent | rect. | 1 | 1 |
| 185 | 221.98 | wind | 5 | 10 | > th | dose independent | rect. | 24 | 2 |
| 189 | 221.98 | wind | 5 | 10 | > th | dose dependent | rect. | 24 | 2 |
| 194 | 222.18 | wind | 3 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 199 | 222.37 | wind | 1 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 440 | 224.11 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 7 | 4 |
| 460 | 225.28 | wind | 1 | 90 | < th | dose dependent | rect. | 7 | 3 |
| 511 | 227.22 | humidity | 90 | 90 | > th | dose dependent | rect. | 14 | 4 |
| 512 | 227.25 | humidity | 90 | 90 | > th | dose dependent | rect. | 15 | 2 |
| 514 | 227.31 | humidity | 90 | 90 | > th | dose independent | rect. | 15 | 3 |
| 524 | 227.64 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 4 |
| 526 | 227.65 | humidity | 90 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 539 | 227.74 | humidity | 90 | 90 | > th | dose independent | rect. | 16 | 1 |
| 554 | 227.95 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 2 |
| 580 | 228.25 | radiation | 20 | 10 | < th | dose independent | rect. | 7 | 1 |
| 582 | 228.31 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 7 | 1 |
| 631 | 229.43 | temperature | 20 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 632 | 229.45 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 2 |
| 636 | 229.48 | temperature | 25 | 90 | < th | dose dependent | rect. | 6 | 3 |
| 664 | 229.65 | wind | 5 | 90 | > th | dose independent | rect. | 6 | 1 |
| 665 | 229.65 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 7 | 4 |
| 666 | 229.65 | wind | 5 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 707 | 230.03 | wind | 5 | 10 | < th | dose independent | rect. | 17 | 1 |
| 718 | 230.13 | wind | 5 | 90 | > th | dose independent | rect. | 4 | 3 |
| 720 | 230.13 | wind | 5 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 726 | 230.15 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 740 | 230.15 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 786 | 230.44 | temperature | 25 | 10 | < th | dose independent | rect. | 7 | 1 |
| 798 | 230.50 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 4 | 7 |
| 809 | 230.60 | wind | 5 | 90 | < th | dose dependent | rect. | 17 | 1 |
| 811 | 230.62 | radiation | 10 | 10 | > th | dose independent | sin | 10 | NA |
| 820 | 230.66 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 824 | 230.69 | wind | 3 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 833 | 230.72 | wind | 5 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 866 | 231.02 | wind | 1 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 872 | 231.08 | wind | 3 | 10 | < th | dose independent | rect. | 10 | 1 |
| 901 | 231.30 | humidity | 80 | 10 | > th | dose independent | rect. | 8 | 1 |
| 913 | 231.36 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 9 |
| 914 | 231.38 | radiation | 20 | 10 | > th | dose independent | rect. | 10 | 1 |
| 917 | 231.39 | radiation | 10 | 10 | > th | dose independent | rect. | 7 | 1 |
| 959 | 231.57 | radiation | 10 | 10 | < th | dose independent | sin | 9 | NA |
| 987 | 231.74 | radiation | 20 | 30 | > th | dose dependent | rect. | 10 | 1 |