Os12g0244000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0244000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.77 | 0.348 | 6.9 | 0.0202 | 0.632 | -0.678 | 0.0517 | 1.49 | -0.525 | 10.8 | 3 | 7 | -- | -- |
| 74.49 | 0.405 | 6.87 | 0.176 | 0.368 | -0.218 | 0.0527 | -- | -0.356 | 10.1 | 3 | 7 | -- | -- |
| 73.34 | 0.399 | 6.87 | 0.189 | 0.517 | -0.227 | -- | 0.577 | -0.4 | 10.6 | 26 | 29 | -- | -- |
| 72.18 | 0.396 | 6.88 | 0.243 | 0.469 | -0.359 | -- | -- | -0.349 | 10.1 | 19.61 | 212 | -- | -- |
| 78.47 | 0.413 | 6.87 | 0.326 | -- | -0.457 | -- | 0.449 | -0.288 | -- | 9.993 | 107 | -- | -- |
| 75.95 | 0.409 | 6.86 | 0.179 | 0.61 | -- | 0.0103 | -- | -0.339 | 10.7 | -- | -- | -- | -- |
| 75.95 | 0.408 | 6.86 | 0.18 | 0.61 | -- | -- | -- | -0.339 | 10.7 | -- | -- | -- | -- |
| 79.15 | 0.414 | 6.88 | 0.194 | -- | -0.456 | -- | -- | -0.35 | -- | 6.571 | 115 | -- | -- |
| 70.56 | 0.391 | 6.88 | -- | 0.573 | -0.539 | -- | -- | -0.42 | 8.25 | 17.71 | 341 | -- | -- |
| 98.92 | 0.465 | 6.88 | 0.168 | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
| 76.8 | 0.41 | 6.87 | -- | 0.609 | -- | -- | -- | -0.359 | 10.7 | -- | -- | -- | -- |
| 79.73 | 0.416 | 6.89 | -- | -- | -0.73 | -- | -- | -0.399 | -- | 17.77 | 1640 | -- | -- |
| 99.67 | 0.466 | 6.88 | -- | -- | -- | -- | -- | -0.361 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.92 | radiation | 20 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 2 | 52.98 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 10 |
| 6 | 53.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 9 | 53.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 18 | 53.43 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 22 | 53.89 | radiation | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 29 | 54.05 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 22 |
| 100 | 54.77 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 117 | 54.77 | radiation | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 150 | 54.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 210 | 55.28 | radiation | 30 | 1440 | < th | dose dependent | rect. | 7 | 6 |
| 212 | 55.37 | radiation | 30 | 1440 | < th | dose dependent | rect. | 17 | 20 |
| 244 | 55.72 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 246 | 55.76 | radiation | 30 | 1440 | < th | dose dependent | rect. | 3 | 10 |
| 254 | 55.79 | radiation | 30 | 1440 | < th | dose dependent | rect. | 21 | 16 |
| 275 | 55.91 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 20 |
| 296 | 56.06 | radiation | 1 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 314 | 56.18 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 321 | 56.24 | radiation | 30 | 1440 | < th | dose dependent | sin | 4 | NA |
| 361 | 56.38 | wind | 5 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 379 | 56.43 | wind | 5 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 407 | 56.53 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 410 | 56.54 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 413 | 56.56 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 433 | 56.58 | wind | 5 | 43200 | > th | dose independent | sin | 8 | NA |
| 438 | 56.59 | wind | 5 | 43200 | < th | dose independent | sin | 8 | NA |
| 444 | 56.61 | radiation | 10 | 1440 | < th | dose independent | sin | 14 | NA |
| 448 | 56.61 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 449 | 56.62 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 457 | 56.62 | wind | 5 | 43200 | > th | dose dependent | rect. | 21 | 15 |
| 460 | 56.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 489 | 56.67 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 490 | 56.67 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 504 | 56.68 | radiation | 1 | 1440 | > th | dose dependent | sin | 5 | NA |
| 517 | 56.69 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 526 | 56.70 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 529 | 56.71 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 548 | 56.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 583 | 56.79 | wind | 5 | 43200 | > th | dose dependent | sin | 8 | NA |
| 587 | 56.80 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 620 | 56.82 | radiation | 30 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 630 | 56.83 | radiation | 30 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 680 | 56.87 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 734 | 56.90 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 5 |
| 738 | 56.90 | radiation | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 807 | 56.96 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 819 | 56.97 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 838 | 56.99 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 844 | 56.99 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 908 | 57.04 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 956 | 57.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 964 | 57.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 995 | 57.10 | wind | 3 | 43200 | > th | dose dependent | rect. | 21 | 8 |