Os12g0242500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0242500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.55 | 0.755 | 8.96 | 1.25 | 1.24 | -1.6 | -0.482 | -1.91 | 0.213 | 8.02 | 83 | 657 | -- | -- |
| 266.22 | 0.76 | 8.97 | 1.06 | 1.22 | -1.57 | -1.1 | -- | 0.168 | 8.03 | 83 | 677 | -- | -- |
| 259.06 | 0.75 | 8.96 | 1.25 | 1.23 | -1.62 | -- | -2.09 | 0.224 | 7.97 | 83.31 | 660 | -- | -- |
| 271.43 | 0.767 | 8.95 | 1.07 | 1.22 | -1.63 | -- | -- | 0.195 | 8.29 | 83 | 697 | -- | -- |
| 274.48 | 0.772 | 8.99 | 0.841 | -- | -1.49 | -- | -0.716 | 0.0905 | -- | 74 | 1312 | -- | -- |
| 328.69 | 0.85 | 8.96 | 1.07 | 0.211 | -- | -1.4 | -- | 0.28 | 9.56 | -- | -- | -- | -- |
| 335.73 | 0.858 | 8.96 | 1.02 | 0.234 | -- | -- | -- | 0.276 | 8.41 | -- | -- | -- | -- |
| 272.77 | 0.769 | 9.01 | 0.797 | -- | -1.43 | -- | -- | 0.0833 | -- | 74.32 | 1365 | -- | -- |
| 277.07 | 0.775 | 9 | -- | 1.1 | -2.21 | -- | -- | 0.0358 | 9.73 | 75 | 975 | -- | -- |
| 338.78 | 0.86 | 8.97 | 1.02 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 363.02 | 0.891 | 8.99 | -- | 0.239 | -- | -- | -- | 0.163 | 8.1 | -- | -- | -- | -- |
| 289.2 | 0.792 | 9.04 | -- | -- | -1.53 | -- | -- | -0.018 | -- | 74.53 | 1352 | -- | -- |
| 366.17 | 0.893 | 9 | -- | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 249.97 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 3 | 251.32 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 9 |
| 4 | 251.57 | humidity | 80 | 720 | < th | dose independent | sin | 18 | NA |
| 5 | 251.76 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 9 | 251.96 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 13 | 252.65 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 14 | 252.68 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 11 |
| 32 | 253.57 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 11 |
| 39 | 254.10 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 13 |
| 55 | 254.85 | humidity | 70 | 720 | > th | dose dependent | rect. | 12 | 20 |
| 91 | 256.06 | humidity | 80 | 720 | > th | dose independent | rect. | 3 | 19 |
| 95 | 256.16 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 102 | 256.37 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 17 |
| 132 | 257.09 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 151 | 257.30 | humidity | 60 | 720 | > th | dose dependent | sin | 17 | NA |
| 152 | 257.32 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 188 | 257.99 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 21 |
| 201 | 258.19 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 18 |
| 205 | 258.21 | humidity | 80 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 209 | 258.35 | wind | 1 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 284 | 259.66 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 328 | 260.22 | humidity | 80 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 330 | 260.25 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 344 | 260.39 | humidity | 80 | 720 | > th | dose independent | sin | 20 | NA |
| 349 | 260.49 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 350 | 260.49 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 353 | 260.51 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 385 | 260.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 386 | 260.85 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 398 | 260.98 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 416 | 261.22 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 13 |
| 436 | 261.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 444 | 261.50 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 465 | 261.79 | temperature | 25 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 473 | 261.83 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 485 | 261.95 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 488 | 262.03 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 512 | 262.29 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 557 | 262.59 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 581 | 262.73 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 600 | 262.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 609 | 262.92 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 614 | 262.95 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 616 | 262.96 | humidity | 80 | 720 | < th | dose independent | rect. | 3 | 19 |
| 620 | 263.00 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 664 | 263.26 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 673 | 263.31 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 692 | 263.47 | wind | 1 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 720 | 263.63 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 734 | 263.66 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 19 |
| 761 | 263.79 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 804 | 264.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 840 | 264.16 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 877 | 264.34 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 893 | 264.45 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 19 |
| 909 | 264.51 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 910 | 264.52 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 919 | 264.57 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 922 | 264.58 | wind | 1 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 926 | 264.60 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 979 | 264.79 | humidity | 70 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 1000 | 264.92 | humidity | 80 | 90 | > th | dose dependent | rect. | 12 | 15 |