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Os12g0242100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glycine-rich cell wall structural protein 1 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.74 (0.0746) R2 : 0.507
β1 : 1.28 (0.265) R2dD : 0.0293 R2D : -0.0407
β2 : 2.49 (0.168) R2dC : 0.238 R2C : 0.255
β3 : 5.03 (0.383) R2dE : 0.353 R2E : 0.0851
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.26 (1.67) R2dD*E : 0.0651 R2D*E : -0.129
γ1 : 1.2 (0.15) R2dN8 : 0.0987 R2N8 : 0.0429
σ : 1.28
deviance : 750.17
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C
peak time of C : 2.65
E
wheather : wind
threshold : 5.425
memory length : 4137
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.16
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
749.38 1.29 8.74 1.3 2.49 5.04 0.478 9.15 1.21 2.65 5.401 4137 8.17 --
816.93 1.33 8.59 1.27 2.26 4.37 0.943 -- 1.4 2.84 5.583 4133 7.32 --
750.17 1.28 8.74 1.28 2.49 5.03 -- 9.26 1.2 2.65 5.425 4137 8.16 --
802.01 1.32 8.58 1.54 2.52 3.91 -- -- 1.35 2.5 4.74 4179 9.5 --
1035.77 1.5 8.76 1.57 -- 6.13 -- 9.69 1.23 -- 3.804 3868 7.92 --
1053.33 1.52 8.66 0.0898 2.6 -- -0.0503 -- 0.937 2.89 -- -- -- --
1053.33 1.52 8.66 0.0909 2.6 -- -- -- 0.937 2.89 -- -- -- --
1068.05 1.52 8.6 1.57 -- 4.63 -- -- 1.26 -- 3.405 3870 8.8 --
836.69 1.35 8.6 -- 2.51 3.8 -- -- 1.39 2.62 4.842 4140 7.39 --
1443.04 1.78 8.65 0.202 -- -- -- -- 1 -- -- -- -- --
1053.55 1.52 8.66 -- 2.6 -- -- -- 0.927 2.89 -- -- -- --
1119.63 1.56 8.64 -- -- 4.28 -- -- 1.01 -- 3.2 3833 8.22 --
1444.11 1.77 8.65 -- -- -- -- -- 0.982 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 758.33 wind 5 4320 > th dose dependent rect. 14 21
4 761.74 wind 5 4320 > th dose dependent sin 14 NA
15 768.28 wind 7 4320 < th dose independent sin 14 NA
17 769.30 wind 5 4320 > th dose dependent rect. 19 21
19 769.72 wind 7 4320 > th dose dependent rect. 17 4
24 769.98 wind 5 4320 > th dose dependent rect. 19 23
26 770.82 wind 5 4320 > th dose dependent rect. 17 23
28 771.44 wind 7 4320 > th dose independent sin 14 NA
31 771.86 wind 7 4320 < th dose independent rect. 14 14
33 772.57 wind 7 4320 > th dose independent rect. 17 4
35 772.66 wind 7 4320 < th dose independent rect. 14 11
37 772.80 wind 5 4320 > th dose independent rect. 14 21
43 773.64 wind 9 4320 < th dose independent rect. 17 4
46 774.19 wind 7 4320 < th dose independent rect. 14 19
58 775.27 wind 5 14400 > th dose independent rect. 23 17
65 776.21 wind 7 4320 < th dose independent rect. 14 8
70 776.49 wind 5 4320 > th dose dependent rect. 23 23
71 776.64 wind 5 4320 > th dose dependent rect. 4 23
72 776.80 wind 5 4320 > th dose dependent no NA NA
74 776.92 wind 5 4320 > th dose dependent rect. 6 23
77 777.08 wind 5 4320 > th dose dependent rect. 2 23
79 777.09 wind 5 4320 > th dose dependent rect. 9 23
82 777.30 wind 5 4320 > th dose independent rect. 20 22
96 777.82 wind 5 14400 > th dose independent rect. 21 19
103 778.12 wind 5 4320 > th dose dependent rect. 17 8
118 779.00 wind 7 4320 > th dose independent rect. 14 14
136 780.00 wind 7 4320 > th dose independent rect. 14 11
139 780.10 wind 5 14400 < th dose independent rect. 23 17
156 780.92 wind 7 4320 < th dose independent rect. 16 9
167 781.29 wind 7 4320 > th dose independent rect. 14 17
184 782.29 wind 7 4320 > th dose independent rect. 16 9
209 783.51 wind 7 4320 > th dose independent rect. 14 8
228 784.10 wind 5 14400 < th dose independent rect. 21 19
253 785.52 wind 5 4320 > th dose independent rect. 17 23
259 785.93 wind 9 4320 > th dose independent rect. 17 18
293 787.87 wind 5 4320 < th dose independent rect. 20 22
298 788.02 wind 9 4320 < th dose independent rect. 17 18
311 788.36 wind 5 4320 > th dose dependent rect. 19 2
430 792.80 wind 5 4320 > th dose independent no NA NA
434 792.87 wind 5 4320 > th dose independent rect. 23 23
438 793.19 wind 5 14400 > th dose independent sin 3 NA
441 793.28 wind 7 4320 > th dose independent rect. 17 1
447 793.36 wind 5 4320 > th dose independent rect. 9 23
454 793.66 wind 9 14400 > th dose dependent rect. 14 8
473 794.22 wind 5 4320 > th dose independent rect. 2 23
475 794.28 wind 5 4320 > th dose independent rect. 4 23
476 794.30 wind 5 4320 > th dose independent rect. 6 23
499 794.90 wind 9 14400 > th dose dependent rect. 14 18
504 794.97 wind 9 14400 > th dose dependent rect. 14 22
521 795.58 wind 5 4320 > th dose independent rect. 20 2
531 795.87 wind 5 4320 < th dose independent rect. 20 2
604 797.92 wind 5 14400 < th dose independent sin 3 NA
642 799.67 wind 5 4320 < th dose independent rect. 17 23
667 800.25 wind 7 4320 < th dose independent rect. 17 1
673 800.34 wind 9 14400 > th dose dependent rect. 14 12
681 800.62 wind 7 4320 < th dose independent rect. 4 21
697 800.85 wind 7 4320 < th dose independent rect. 24 22
732 801.57 wind 7 4320 < th dose independent rect. 6 23
737 801.67 wind 7 4320 < th dose independent rect. 8 23
739 801.74 wind 7 4320 < th dose independent no NA NA
799 803.44 wind 7 4320 < th dose independent rect. 4 18
988 807.48 wind 5 4320 > th dose dependent rect. 19 8