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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0240800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0753) R2 : 0.171
β1 : 1.44 (0.564) R2dD : 0.161 R2D : -0.523
β2 : 0.525 (0.101) R2dC : 0.0498 R2C : -0.104
β3 : -1.31 (0.419) R2dE : 0.198 R2E : -0.379
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 14.7 (3.31) R2dD*E : 0.732 R2D*E : -0.203
γ1 : 0.305 (0.0937) R2dN8 : 0.0273 R2N8 : -0.0808
σ : 0.795
deviance : 291.31
__
_____
C
peak time of C : 12.5
E
wheather : temperature
threshold : 29.49
memory length : 4342
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
290.93 0.801 3.54 1.48 0.526 -1.34 -0.32 14.9 0.301 12.7 29.52 4342 -- --
309.51 0.826 3.82 -0.772 0.561 -0.309 -0.351 -- 0.236 12.7 6.144 47520 -- --
291.31 0.795 3.54 1.44 0.525 -1.31 -- 14.7 0.305 12.5 29.49 4342 -- --
309.95 0.825 3.83 -0.787 0.561 -0.303 -- -- 0.233 12.5 -5.257 47520 -- --
308.48 0.818 3.55 1.49 -- -1.35 -- 14.3 0.344 -- 29.15 4236 -- --
310.44 0.826 3.84 -0.832 0.484 -- -0.335 -- 0.193 12.5 -- -- -- --
310.83 0.826 3.84 -0.846 0.486 -- -- -- 0.191 12.1 -- -- -- --
324.35 0.842 3.85 -0.917 -- 0.307 -- -- 0.143 -- 3.413 47520 -- --
315.08 0.827 3.77 -- 0.475 -0.615 -- -- 0.469 12.1 6.331 47520 -- --
325.7 0.843 3.85 -0.862 -- -- -- -- 0.183 -- -- -- -- --
329.69 0.849 3.81 -- 0.498 -- -- -- 0.285 12.2 -- -- -- --
329.27 0.845 3.78 -- -- -0.643 -- -- 0.472 -- 4.737 47520 -- --
345.28 0.867 3.82 -- -- -- -- -- 0.279 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 284.01 temperature 25 30 > th dose independent rect. 18 17
2 284.60 temperature 25 30 > th dose independent rect. 1 10
4 285.36 temperature 25 270 > th dose dependent rect. 1 7
7 285.85 temperature 25 30 > th dose independent rect. 5 6
8 285.97 wind 5 10 > th dose independent rect. 9 9
10 286.14 wind 1 4320 < th dose dependent rect. 4 1
19 286.64 temperature 25 10 > th dose dependent sin 9 NA
21 286.71 temperature 25 30 > th dose independent rect. 22 13
25 286.95 wind 1 10 > th dose dependent rect. 9 9
27 287.41 wind 5 90 > th dose independent rect. 8 9
31 287.56 wind 1 4320 < th dose dependent rect. 2 3
46 288.31 temperature 30 4320 > th dose independent rect. 15 19
51 288.37 temperature 30 4320 < th dose independent rect. 15 13
52 288.38 temperature 30 4320 < th dose independent rect. 15 4
56 288.39 temperature 30 4320 < th dose independent rect. 15 18
59 288.40 temperature 30 4320 < th dose independent rect. 15 15
67 288.45 temperature 30 4320 > th dose independent rect. 15 4
84 288.47 humidity 60 14400 < th dose dependent rect. 15 19
87 288.50 wind 1 14400 > th dose independent rect. 4 3
90 288.50 humidity 50 14400 > th dose independent rect. 15 20
91 288.51 wind 1 14400 < th dose independent rect. 4 3
93 288.56 temperature 30 4320 < th dose independent sin 12 NA
95 288.57 humidity 60 4320 < th dose independent rect. 14 1
103 288.79 temperature 30 4320 > th dose independent sin 12 NA
107 288.80 temperature 30 4320 > th dose dependent rect. 15 4
144 289.02 wind 5 10 > th dose independent sin 21 NA
145 289.02 wind 5 10 > th dose independent rect. 9 13
148 289.08 wind 5 10 > th dose independent rect. 9 15
158 289.14 humidity 60 14400 < th dose dependent sin 12 NA
163 289.18 wind 5 10 < th dose independent rect. 6 14
170 289.21 humidity 60 14400 < th dose dependent rect. 15 4
229 289.39 temperature 30 4320 > th dose dependent sin 12 NA
243 289.54 wind 1 43200 > th dose independent rect. 4 7
249 289.58 temperature 25 4320 > th dose dependent rect. 2 6
257 289.63 wind 1 43200 < th dose independent rect. 4 8
274 289.68 wind 5 10 < th dose independent rect. 2 23
276 289.69 wind 5 10 < th dose independent rect. 3 21
279 289.72 temperature 25 30 > th dose independent sin 8 NA
286 289.77 wind 1 14400 > th dose independent rect. 2 5
290 289.78 humidity 50 14400 > th dose independent sin 11 NA
291 289.78 wind 5 10 > th dose independent rect. 2 16
302 289.87 temperature 25 270 > th dose independent rect. 5 3
330 289.96 humidity 50 14400 > th dose independent rect. 15 2
335 289.97 wind 5 10 > th dose independent rect. 21 21
338 289.98 temperature 25 10 > th dose dependent rect. 18 17
341 290.00 humidity 70 14400 < th dose dependent rect. 10 1
354 290.09 wind 1 14400 < th dose independent rect. 2 5
359 290.11 temperature 30 4320 < th dose independent rect. 17 11
367 290.14 wind 5 10 < th dose independent rect. 15 23
369 290.15 temperature 30 4320 < th dose independent rect. 17 2
375 290.16 humidity 60 14400 < th dose independent rect. 16 21
377 290.17 wind 5 90 > th dose independent rect. 23 18
386 290.20 wind 1 43200 < th dose dependent rect. 4 9
388 290.21 temperature 30 4320 < th dose independent rect. 17 13
391 290.21 wind 5 10 > th dose independent rect. 16 23
419 290.28 wind 5 90 > th dose independent rect. 1 16
421 290.29 wind 5 10 < th dose independent rect. 6 18
442 290.30 temperature 30 4320 > th dose independent rect. 17 16
447 290.33 wind 5 90 > th dose independent rect. 21 21
469 290.40 temperature 30 4320 > th dose independent rect. 17 2
485 290.41 wind 5 90 > th dose independent rect. 11 6
486 290.41 wind 1 90 < th dose dependent rect. 9 2
491 290.42 humidity 60 14400 > th dose independent rect. 16 17
498 290.43 humidity 70 14400 < th dose dependent rect. 17 16
572 290.67 wind 5 90 > th dose independent sin 23 NA
573 290.67 humidity 70 14400 < th dose independent rect. 18 15
583 290.72 atmosphere 995 1440 > th dose independent rect. 17 1
606 290.78 humidity 60 14400 < th dose independent rect. 10 3
635 290.84 humidity 50 14400 > th dose independent rect. 15 6
642 290.85 humidity 50 14400 > th dose independent rect. 15 9
649 290.87 wind 3 10 < th dose independent rect. 6 8
655 290.88 humidity 50 14400 > th dose independent rect. 15 15
658 290.89 humidity 50 14400 < th dose independent rect. 17 18
704 290.98 temperature 25 10 > th dose dependent rect. 21 13
733 291.07 wind 7 10 < th dose dependent rect. 6 14
749 291.10 wind 5 90 < th dose independent rect. 2 22
771 291.17 wind 5 10 < th dose independent rect. 13 23
775 291.19 wind 1 43200 < th dose independent rect. 2 12
780 291.19 wind 1 10 > th dose dependent rect. 24 18
781 291.20 humidity 60 14400 > th dose independent rect. 11 1
798 291.20 wind 7 10 < th dose dependent rect. 6 8
883 291.28 humidity 50 14400 < th dose independent sin 11 NA
891 291.29 humidity 60 14400 < th dose independent rect. 10 23
903 291.30 atmosphere 995 30 > th dose dependent rect. 18 15
908 291.31 humidity 60 14400 < th dose independent rect. 7 12
920 291.32 humidity 60 14400 < th dose independent no NA NA