Os12g0240000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0240000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 275.3 | 0.78 | 4.06 | 0.809 | 1.68 | -0.93 | 1.92 | 0.931 | -0.195 | 14.9 | 39.8 | 10463 | -- | -- |
| 273.33 | 0.77 | 4.06 | 0.895 | 1.68 | -1.03 | 1.85 | -- | -0.212 | 14.9 | 39.89 | 13200 | -- | -- |
| 280.07 | 0.779 | 4.06 | 0.936 | 1.7 | -1.01 | -- | 1.12 | -0.251 | 14.8 | 39.04 | 17547 | -- | -- |
| 283.66 | 0.784 | 4.08 | 0.987 | 1.67 | -1 | -- | -- | -0.233 | 14.9 | 47.03 | 17561 | -- | -- |
| 439.44 | 0.976 | 4.04 | 0.854 | -- | -0.924 | -- | 1.49 | -0.236 | -- | 38.25 | 19180 | -- | -- |
| 301.95 | 0.815 | 4.03 | 0.626 | 1.68 | -- | 1.87 | -- | 0.00909 | 14.9 | -- | -- | -- | -- |
| 313.59 | 0.829 | 4.02 | 0.668 | 1.68 | -- | -- | -- | 0.0197 | 14.8 | -- | -- | -- | -- |
| 444.49 | 0.982 | 4.09 | 1.07 | -- | -1.11 | -- | -- | -0.254 | -- | 47.74 | 19168 | -- | -- |
| 303.75 | 0.812 | 4.08 | -- | 1.66 | -0.681 | -- | -- | -0.218 | 14.8 | 40.64 | 13192 | -- | -- |
| 477.01 | 1.02 | 4.03 | 0.596 | -- | -- | -- | -- | -0.0234 | -- | -- | -- | -- | -- |
| 325.36 | 0.844 | 4.04 | -- | 1.67 | -- | -- | -- | -0.0547 | 14.8 | -- | -- | -- | -- |
| 462.75 | 1 | 4.12 | -- | -- | -0.885 | -- | -- | -0.355 | -- | 40.01 | 19164 | -- | -- |
| 486.4 | 1.03 | 4.04 | -- | -- | -- | -- | -- | -0.0895 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 265.01 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 2 | 265.01 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 5 |
| 3 | 265.18 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 4 | 265.18 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 5 | 265.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 10 | 265.56 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 11 | 265.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 12 | 265.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 13 | 265.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 23 | 265.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 67 | 267.40 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 70 | 267.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 101 | 268.36 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 103 | 268.37 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 108 | 268.42 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 133 | 268.57 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 159 | 268.70 | radiation | 10.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 160 | 268.70 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 171 | 268.81 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 172 | 268.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 174 | 268.82 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 15 |
| 175 | 268.82 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 15 |
| 182 | 268.87 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 208 | 268.99 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 218 | 269.03 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 220 | 269.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 14 |
| 238 | 269.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 16 |
| 257 | 269.27 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 262 | 269.30 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 307 | 269.35 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 343 | 269.47 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 351 | 269.52 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 368 | 269.61 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 18 | NA |
| 391 | 269.67 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 18 | NA |
| 393 | 269.67 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 402 | 269.69 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 10 | 6 |
| 450 | 269.79 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 452 | 269.79 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 510 | 270.05 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 511 | 270.05 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 18 | NA |
| 513 | 270.06 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 521 | 270.08 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 569 | 270.32 | radiation | 10.0 | 43200 | > th | dose independent | no | NA | NA |
| 690 | 270.48 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 746 | 270.71 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 24 | 19 |
| 753 | 270.74 | humidity | 70.0 | 270 | > th | dose independent | rect. | 15 | 4 |
| 786 | 270.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 796 | 270.88 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 835 | 270.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 839 | 271.01 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 844 | 271.02 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 845 | 271.03 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 9 |
| 855 | 271.08 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 856 | 271.08 | humidity | 50.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 901 | 271.17 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 911 | 271.20 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 924 | 271.25 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 13 | 20 |
| 927 | 271.26 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 931 | 271.26 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 12 | 18 |
| 933 | 271.27 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 951 | 271.30 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 15 |
| 953 | 271.32 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 954 | 271.32 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 15 | NA |