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Os12g0239300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.0265) R2 : 0.417
β1 : -0.898 (0.0989) R2dD : 0.119 R2D : 0.00702
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.27 (0.079) R2dE : 0.452 R2E : 0.297
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.142 (0.0626) R2dN8 : 0.0139 R2N8 : -0.0574
σ : 0.478
deviance : 105.22
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.79
memory length : 9665
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.48 0.454 13.6 -1.94 0.365 1.58 0.411 -4.65 0.0289 0.123 26.01 2681 -- --
93.42 0.45 13.6 -0.869 0.401 1.19 0.246 -- -0.134 23.7 25.69 9719 -- --
94.17 0.452 13.6 -1.92 0.36 1.57 -- -4.47 0.037 23.9 26.01 2670 -- --
93.68 0.451 13.6 -0.881 0.431 1.2 -- -- -0.135 23.8 25.77 9708 -- --
101.57 0.469 13.6 -1.95 -- 1.7 -- -4.54 -0.0257 -- 25.6 2543 -- --
145.75 0.566 13.5 -0.375 0.542 -- 0.465 -- 0.335 0.204 -- -- -- --
146.67 0.567 13.5 -0.393 0.541 -- -- -- 0.333 0.0616 -- -- -- --
105.22 0.478 13.6 -0.898 -- 1.27 -- -- -0.142 -- 25.79 9665 -- --
109.54 0.487 13.5 -- 0.447 0.948 -- -- 0.098 23.7 27.33 8309 -- --
165.06 0.6 13.5 -0.376 -- -- -- -- 0.341 -- -- -- -- --
150.74 0.574 13.5 -- 0.535 -- -- -- 0.377 0.0205 -- -- -- --
121.69 0.514 13.5 -- -- 1.01 -- -- 0.0801 -- 27.23 8247 -- --
168.79 0.606 13.5 -- -- -- -- -- 0.382 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.77 radiation 40 14400 < th dose dependent rect. 18 9
3 82.96 radiation 1 1440 < th dose dependent rect. 18 9
4 83.01 radiation 1 1440 < th dose dependent rect. 18 7
10 83.15 radiation 40 14400 < th dose dependent rect. 18 7
12 83.18 wind 3 43200 < th dose independent rect. 3 1
25 83.42 radiation 1 1440 < th dose dependent rect. 18 2
32 83.55 radiation 10 14400 < th dose dependent rect. 18 5
35 83.59 radiation 10 14400 < th dose dependent rect. 18 3
39 83.66 radiation 30 14400 > th dose independent rect. 16 16
47 83.86 wind 3 43200 > th dose independent rect. 3 1
54 84.12 wind 3 43200 > th dose dependent rect. 10 3
62 84.35 wind 3 43200 < th dose dependent rect. 3 1
81 85.17 wind 7 43200 > th dose independent rect. 10 1
82 85.21 wind 9 43200 < th dose dependent rect. 11 1
90 85.32 wind 7 43200 < th dose independent rect. 5 9
94 85.39 wind 3 43200 > th dose dependent rect. 5 9
95 85.40 radiation 20 14400 > th dose dependent rect. 16 15
98 85.47 wind 7 43200 > th dose independent rect. 4 10
105 85.52 wind 7 43200 < th dose independent rect. 8 5
110 85.58 wind 7 43200 > th dose independent rect. 8 5
113 85.59 radiation 1 14400 < th dose independent rect. 18 11
117 85.62 wind 7 43200 < th dose independent rect. 10 1
134 85.73 radiation 1 14400 < th dose independent rect. 18 9
137 85.76 radiation 1 14400 < th dose independent rect. 18 7
144 85.82 radiation 1 14400 < th dose independent rect. 18 5
149 85.83 radiation 1 14400 > th dose independent rect. 18 11
150 85.84 radiation 1 14400 < th dose independent rect. 18 3
152 85.85 radiation 1 14400 < th dose independent rect. 18 1
159 85.86 radiation 30 14400 > th dose dependent rect. 15 17
167 85.95 radiation 30 14400 > th dose independent rect. 7 1
189 86.09 radiation 1 14400 > th dose independent rect. 18 1
204 86.19 radiation 30 14400 < th dose independent rect. 15 17
212 86.25 atmosphere 1005 43200 > th dose independent rect. 18 1
238 86.52 atmosphere 1005 43200 < th dose independent rect. 18 1
247 86.66 wind 1 43200 > th dose dependent rect. 3 1
254 86.76 atmosphere 1005 43200 > th dose independent rect. 16 1
265 86.87 humidity 90 43200 > th dose independent rect. 9 1
267 86.87 radiation 20 14400 < th dose independent rect. 16 15
282 87.09 wind 3 43200 > th dose dependent sin 4 NA
284 87.11 atmosphere 1005 43200 > th dose independent rect. 16 3
300 87.23 humidity 80 43200 > th dose dependent rect. 10 1
307 87.31 wind 7 43200 < th dose independent sin 4 NA
320 87.42 wind 7 43200 > th dose independent sin 5 NA
330 87.46 wind 9 43200 < th dose dependent rect. 3 11
337 87.51 humidity 90 43200 < th dose independent rect. 9 2
353 87.59 radiation 40 14400 > th dose dependent rect. 8 1
457 88.10 radiation 20 14400 > th dose dependent rect. 16 1
622 88.87 radiation 20 14400 < th dose independent rect. 16 11
623 88.88 radiation 20 14400 < th dose independent rect. 16 9
631 88.92 radiation 20 14400 < th dose independent rect. 16 2
632 88.92 radiation 20 14400 < th dose independent rect. 16 5
643 88.94 humidity 70 14400 < th dose independent rect. 18 13
672 89.05 radiation 1 1440 > th dose dependent rect. 18 12
678 89.08 humidity 70 14400 < th dose independent rect. 18 4
695 89.12 wind 3 43200 > th dose dependent rect. 5 1
820 89.58 humidity 90 43200 > th dose independent rect. 22 1
825 89.60 radiation 1 14400 < th dose dependent rect. 24 5
855 89.76 radiation 40 14400 < th dose independent rect. 8 1
883 89.90 radiation 1 14400 < th dose dependent rect. 22 7
903 89.96 radiation 1 43200 < th dose dependent rect. 4 1
907 89.97 radiation 1 43200 < th dose dependent rect. 2 3
920 90.02 humidity 90 43200 > th dose dependent rect. 17 6
930 90.07 radiation 1 14400 > th dose dependent rect. 17 12
997 90.31 radiation 1 14400 > th dose dependent rect. 17 2