Os12g0239200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0239200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.45 | 0.251 | 10.6 | 0.746 | 0.438 | 0.528 | -0.158 | -0.896 | 0.41 | 9.17 | 90.64 | 6187 | -- | -- |
| 29.2 | 0.252 | 10.6 | 0.615 | 0.468 | 0.622 | -0.209 | -- | 0.424 | 8.75 | 91.71 | 5678 | -- | -- |
| 28.51 | 0.249 | 10.6 | 0.752 | 0.428 | 0.53 | -- | -0.955 | 0.41 | 9.13 | 90.57 | 6276 | -- | -- |
| 29.39 | 0.252 | 10.6 | 0.592 | 0.465 | 0.594 | -- | -- | 0.408 | 8.84 | 91.73 | 5680 | -- | -- |
| 38.47 | 0.289 | 10.6 | 0.75 | -- | 0.672 | -- | -1.02 | 0.42 | -- | 91.21 | 6464 | -- | -- |
| 34.7 | 0.276 | 10.6 | 0.686 | 0.48 | -- | -0.234 | -- | 0.265 | 8.99 | -- | -- | -- | -- |
| 34.89 | 0.277 | 10.6 | 0.678 | 0.48 | -- | -- | -- | 0.265 | 9.01 | -- | -- | -- | -- |
| 39.28 | 0.292 | 10.6 | 0.558 | -- | 0.716 | -- | -- | 0.48 | -- | 91.29 | 5032 | -- | -- |
| 37.76 | 0.286 | 10.6 | -- | 0.465 | 0.712 | -- | -- | 0.403 | 8.79 | 90 | 5680 | -- | -- |
| 48.16 | 0.324 | 10.6 | 0.678 | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
| 47.02 | 0.321 | 10.7 | -- | 0.482 | -- | -- | -- | 0.19 | 8.91 | -- | -- | -- | -- |
| 46.77 | 0.319 | 10.6 | -- | -- | 0.86 | -- | -- | 0.498 | -- | 89.47 | 5040 | -- | -- |
| 60.27 | 0.362 | 10.7 | -- | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.71 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 2 | 28.06 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 3 | 28.25 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 4 | 28.26 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 5 | 28.27 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 8 | 28.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 7 |
| 9 | 28.32 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 14 | 28.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 32 | 28.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 47 | 28.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 48 | 28.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 50 | 28.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 52 | 28.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 4 |
| 106 | 28.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 109 | 28.57 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 141 | 28.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 167 | 28.66 | humidity | 90 | 14400 | > th | dose independent | sin | 14 | NA |
| 171 | 28.66 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 207 | 28.71 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 214 | 28.72 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 220 | 28.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 225 | 28.73 | humidity | 80 | 14400 | > th | dose dependent | sin | 12 | NA |
| 284 | 28.78 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 318 | 28.80 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 334 | 28.81 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 416 | 28.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 429 | 28.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 431 | 28.88 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 475 | 28.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 495 | 28.90 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 716 | 29.02 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 782 | 29.05 | humidity | 90 | 14400 | < th | dose independent | sin | 14 | NA |
| 815 | 29.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 22 |
| 888 | 29.10 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 906 | 29.11 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 917 | 29.11 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 982 | 29.13 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 985 | 29.13 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 986 | 29.13 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 1 |