Os12g0237900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os12g0237900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.1 | 0.587 | 6.92 | -1.57 | 1.92 | 1.77 | 0.114 | -0.859 | 0.342 | 2.82 | 18.73 | 5660 | -- | -- |
| 155.49 | 0.581 | 6.91 | -1.42 | 1.91 | 1.83 | 0.0869 | -- | 0.292 | 2.82 | 17.52 | 7022 | -- | -- |
| 155.17 | 0.58 | 6.94 | -1.55 | 1.91 | 1.74 | -- | -0.604 | 0.254 | 2.85 | 18.43 | 7009 | -- | -- |
| 154.84 | 0.58 | 6.93 | -1.46 | 1.91 | 1.83 | -- | -- | 0.212 | 2.86 | 17.89 | 8424 | -- | -- |
| 361.51 | 0.886 | 6.91 | -1.44 | -- | 2.06 | -- | 0.108 | 0.287 | -- | 18.05 | 6889 | -- | -- |
| 237.95 | 0.723 | 6.79 | -0.404 | 2.01 | -- | 0.233 | -- | 0.859 | 2.79 | -- | -- | -- | -- |
| 238.13 | 0.723 | 6.79 | -0.41 | 2.01 | -- | -- | -- | 0.857 | 2.81 | -- | -- | -- | -- |
| 361.42 | 0.885 | 6.94 | -1.47 | -- | 2.03 | -- | -- | 0.179 | -- | 18.85 | 8320 | -- | -- |
| 188.38 | 0.639 | 6.87 | -- | 1.97 | 1.23 | -- | -- | 0.527 | 2.87 | 23.41 | 8294 | -- | -- |
| 472.12 | 1.02 | 6.78 | -0.324 | -- | -- | -- | -- | 0.909 | -- | -- | -- | -- | -- |
| 242.56 | 0.729 | 6.78 | -- | 2 | -- | -- | -- | 0.903 | 2.8 | -- | -- | -- | -- |
| 371.7 | 0.898 | 6.82 | -- | -- | 1.61 | -- | -- | 0.691 | -- | 22.68 | 2571 | -- | -- |
| 474.89 | 1.02 | 6.77 | -- | -- | -- | -- | -- | 0.945 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.80 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 5 | 157.25 | temperature | 25 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 6 | 157.27 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 10 |
| 15 | 157.36 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 19 |
| 43 | 157.47 | temperature | 25 | 14400 | < th | dose dependent | sin | 14 | NA |
| 57 | 157.51 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 20 |
| 114 | 157.61 | temperature | 25 | 14400 | < th | dose dependent | rect. | 20 | 23 |
| 115 | 157.61 | temperature | 25 | 14400 | < th | dose dependent | rect. | 24 | 23 |
| 116 | 157.62 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 125 | 157.63 | temperature | 15 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 153 | 157.67 | temperature | 25 | 14400 | < th | dose dependent | rect. | 2 | 23 |
| 207 | 157.82 | temperature | 25 | 14400 | < th | dose dependent | rect. | 24 | 12 |
| 217 | 157.84 | temperature | 25 | 14400 | < th | dose dependent | sin | 7 | NA |
| 292 | 158.10 | temperature | 15 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 317 | 158.23 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 7 |
| 360 | 158.40 | temperature | 15 | 14400 | > th | dose dependent | sin | 12 | NA |
| 361 | 158.40 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 3 |
| 366 | 158.42 | temperature | 15 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 444 | 158.57 | temperature | 25 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 487 | 158.65 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 488 | 158.65 | temperature | 20 | 14400 | > th | dose independent | rect. | 14 | 15 |
| 590 | 158.79 | temperature | 30 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 714 | 158.93 | temperature | 20 | 14400 | > th | dose independent | sin | 14 | NA |
| 789 | 159.00 | temperature | 25 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 837 | 159.04 | temperature | 20 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 866 | 159.06 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 938 | 159.11 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 6 |