Os12g0236700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Chaperonin Cpn60/TCP-1 family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0236700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Chaperonin Cpn60/TCP-1 family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.17 | 0.517 | 6.77 | 0.281 | 1.09 | -0.189 | -0.471 | 5.49 | 0.322 | 4.72 | 30.6 | 1284 | -- | -- |
| 122.46 | 0.515 | 6.88 | -0.662 | 1.11 | 0.497 | -0.458 | -- | 0.328 | 4.67 | 30.5 | 1530 | -- | -- |
| 121.71 | 0.514 | 6.77 | 0.288 | 1.09 | -0.195 | -- | 5.53 | 0.325 | 4.79 | 30.6 | 1257 | -- | -- |
| 122.89 | 0.516 | 6.88 | -0.648 | 1.11 | 0.475 | -- | -- | 0.333 | 4.73 | 30.42 | 1522 | -- | -- |
| 183.69 | 0.631 | 6.78 | 0.3 | -- | -0.1 | -- | 5.62 | 0.357 | -- | 30.54 | 1262 | -- | -- |
| 131.62 | 0.538 | 6.9 | -0.535 | 1.14 | -- | -0.357 | -- | 0.238 | 4.62 | -- | -- | -- | -- |
| 131.95 | 0.538 | 6.9 | -0.533 | 1.14 | -- | -- | -- | 0.24 | 4.66 | -- | -- | -- | -- |
| 186.11 | 0.635 | 6.89 | -0.653 | -- | 0.521 | -- | -- | 0.354 | -- | 30.75 | 1274 | -- | -- |
| 133.59 | 0.538 | 6.87 | -- | 1.1 | 0.373 | -- | -- | 0.377 | 4.75 | 30.66 | 1518 | -- | -- |
| 201.06 | 0.663 | 6.91 | -0.489 | -- | -- | -- | -- | 0.27 | -- | -- | -- | -- | -- |
| 139.43 | 0.552 | 6.89 | -- | 1.13 | -- | -- | -- | 0.3 | 4.67 | -- | -- | -- | -- |
| 196.29 | 0.653 | 6.87 | -- | -- | 0.464 | -- | -- | 0.427 | -- | 30.6 | 1262 | -- | -- |
| 207.37 | 0.672 | 6.9 | -- | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.49 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 2 | 117.50 | wind | 7.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 3 | 117.52 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 4 | 117.52 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 5 | 117.53 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 7 | 117.61 | wind | 1.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 10 | 117.61 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 12 | 117.61 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 13 | 117.61 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 17 | 117.61 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 19 | 117.61 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 24 | 117.61 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 25 | 117.61 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 26 | 117.61 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 27 | 117.61 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 32 | 117.61 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 33 | 117.62 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 35 | 117.65 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 38 | 117.65 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 42 | 117.65 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 48 | 117.65 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 49 | 117.65 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 69 | 117.65 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 72 | 117.65 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 80 | 117.88 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 81 | 117.89 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 84 | 117.96 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 86 | 118.04 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 91 | 118.32 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 93 | 118.37 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 100 | 118.67 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 107 | 118.95 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 152 | 119.76 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 168 | 120.24 | wind | 5.0 | 43200 | < th | dose independent | rect. | 22 | 3 |
| 182 | 120.41 | wind | 5.0 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 183 | 120.41 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 216 | 120.54 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 242 | 120.65 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 272 | 120.74 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 329 | 120.92 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 330 | 120.92 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 375 | 120.99 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 19 | 8 |
| 381 | 121.00 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 542 | 121.17 | temperature | 25.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 591 | 121.22 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 594 | 121.23 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 9 |
| 647 | 121.30 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 673 | 121.33 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 22 | 3 |
| 734 | 121.38 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 770 | 121.42 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 782 | 121.43 | wind | 1.0 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 783 | 121.43 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 16 | 2 |