Os12g0236200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os12g0236200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 338.17 | 0.864 | 6.47 | 0.505 | 1.1 | -1.56 | 0.514 | -1.8 | -0.786 | 10.2 | 21.6 | 1767 | -- | -- |
| 341.06 | 0.86 | 6.41 | 0.84 | 1.11 | -1.36 | 0.614 | -- | -0.657 | 9.98 | 22.1 | 1501 | -- | -- |
| 338.28 | 0.857 | 6.46 | 0.462 | 1.1 | -1.41 | -- | -1.54 | -0.776 | 10.2 | 21.9 | 1770 | -- | -- |
| 342.42 | 0.862 | 6.4 | 0.868 | 1.1 | -1.36 | -- | -- | -0.652 | 10 | 22.1 | 1500 | -- | -- |
| 381.12 | 0.909 | 6.46 | 0.525 | -- | -1.47 | -- | -0.971 | -0.682 | -- | 22.2 | 838 | -- | -- |
| 408.05 | 0.947 | 6.5 | 0.35 | 1.12 | -- | 0.512 | -- | -1.1 | 10.1 | -- | -- | -- | -- |
| 409.07 | 0.947 | 6.5 | 0.37 | 1.11 | -- | -- | -- | -1.1 | 10.2 | -- | -- | -- | -- |
| 384.58 | 0.913 | 6.42 | 0.837 | -- | -1.46 | -- | -- | -0.608 | -- | 22.21 | 823 | -- | -- |
| 356.41 | 0.879 | 6.45 | -- | 0.901 | -1.09 | -- | -- | -0.826 | 10 | 22.4 | 828 | -- | -- |
| 484.4 | 1.03 | 6.53 | 0.355 | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
| 412.69 | 0.95 | 6.51 | -- | 1.11 | -- | -- | -- | -1.14 | 10.2 | -- | -- | -- | -- |
| 401.94 | 0.934 | 6.45 | -- | -- | -1.32 | -- | -- | -0.745 | -- | 22.27 | 808 | -- | -- |
| 487.71 | 1.03 | 6.54 | -- | -- | -- | -- | -- | -1.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 333.53 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 6 | 341.21 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 9 | 341.61 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 14 | 342.36 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 20 | 343.05 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 32 | 343.84 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 34 | 343.92 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 38 | 344.07 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 42 | 344.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 70 | 344.52 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 76 | 344.63 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 86 | 344.85 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 96 | 345.09 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 97 | 345.17 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 2 |
| 111 | 345.47 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 114 | 345.51 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 22 |
| 118 | 345.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 119 | 345.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 134 | 345.79 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 142 | 345.86 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 154 | 346.02 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 155 | 346.03 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 156 | 346.04 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 205 | 346.70 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 262 | 347.52 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 297 | 348.08 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 337 | 348.70 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 378 | 349.16 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 439 | 349.66 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 449 | 349.76 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 460 | 349.94 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 508 | 350.41 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 525 | 350.58 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 571 | 350.98 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 576 | 351.04 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 630 | 351.60 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 646 | 351.71 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 651 | 351.75 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 706 | 352.20 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 739 | 352.44 | temperature | 10.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 837 | 353.02 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 838 | 353.02 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 883 | 353.21 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 917 | 353.35 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 11 |