Os12g0236100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0236100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 180.1 | 0.631 | 9.66 | 0.119 | 0.96 | 0.725 | -1.31 | 3.48 | -0.537 | 18.4 | 26.5 | 1405 | -- | -- |
| 186.78 | 0.637 | 9.76 | -0.734 | 0.719 | 1.31 | -1.6 | -- | -0.696 | 18.2 | 26.67 | 2257 | -- | -- |
| 184.3 | 0.632 | 9.66 | 0.157 | 0.958 | 0.726 | -- | 3.62 | -0.534 | 18.4 | 26.59 | 1388 | -- | -- |
| 191.01 | 0.644 | 9.76 | -0.729 | 0.903 | 1.13 | -- | -- | -0.679 | 18.2 | 26.82 | 2698 | -- | -- |
| 218.66 | 0.689 | 9.69 | -0.23 | -- | 1.23 | -- | 2.6 | -0.645 | -- | 25.6 | 2055 | -- | -- |
| 239.14 | 0.725 | 9.76 | -0.42 | 0.9 | -- | -1.44 | -- | -0.688 | 18.8 | -- | -- | -- | -- |
| 244.35 | 0.732 | 9.77 | -0.398 | 0.894 | -- | -- | -- | -0.692 | 18.9 | -- | -- | -- | -- |
| 216.44 | 0.685 | 9.77 | -0.763 | -- | 1.57 | -- | -- | -0.816 | -- | 25.17 | 780 | -- | -- |
| 204.6 | 0.666 | 9.73 | -- | 0.92 | 1 | -- | -- | -0.538 | 18.3 | 28.2 | 2664 | -- | -- |
| 286.25 | 0.791 | 9.75 | -0.417 | -- | -- | -- | -- | -0.709 | -- | -- | -- | -- | -- |
| 248.52 | 0.737 | 9.76 | -- | 0.899 | -- | -- | -- | -0.648 | 18.9 | -- | -- | -- | -- |
| 230.85 | 0.708 | 9.75 | -- | -- | 1.44 | -- | -- | -0.718 | -- | 25.25 | 739 | -- | -- |
| 290.83 | 0.796 | 9.74 | -- | -- | -- | -- | -- | -0.663 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.04 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 2 | 178.22 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 3 | 178.22 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 4 | 178.87 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 12 |
| 5 | 179.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 11 | 180.27 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 12 | 180.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 19 | 180.57 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 20 | 180.65 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 21 | 180.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 22 | 180.68 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 21 |
| 25 | 180.71 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 28 | 180.76 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 17 |
| 30 | 180.77 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 15 |
| 52 | 180.86 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 6 | 14 |
| 84 | 180.93 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 6 | 14 |
| 99 | 180.96 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 106 | 180.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 109 | 180.99 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 114 | 180.99 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 140 | 181.04 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 142 | 181.06 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 177 | 181.16 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 191 | 181.20 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 213 | 181.25 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 231 | 181.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 17 |
| 238 | 181.30 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 268 | 181.39 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 302 | 181.46 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 326 | 181.54 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 340 | 181.58 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 6 | 20 |
| 356 | 181.61 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 397 | 181.67 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 444 | 181.78 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 467 | 181.82 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 470 | 181.82 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 4 |
| 477 | 181.83 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 502 | 181.86 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 24 | 19 |
| 508 | 181.87 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 19 | NA |
| 550 | 181.92 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 557 | 181.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 576 | 181.95 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 579 | 181.95 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 3 | 8 |
| 583 | 181.96 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 584 | 181.96 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 3 | 12 |
| 611 | 181.98 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 625 | 182.00 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 665 | 182.04 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 681 | 182.05 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 690 | 182.06 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 4 | NA |
| 735 | 182.11 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 745 | 182.12 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 793 | 182.17 | atmosphere | 1000.0 | 43200 | < th | dose dependent | no | NA | NA |
| 818 | 182.19 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 831 | 182.20 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 880 | 182.28 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 882 | 182.28 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 7 |
| 890 | 182.29 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 891 | 182.29 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 893 | 182.29 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 895 | 182.30 | atmosphere | 1000.0 | 43200 | < th | dose independent | no | NA | NA |
| 900 | 182.30 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 914 | 182.32 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 915 | 182.32 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 920 | 182.33 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 924 | 182.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 940 | 182.36 | atmosphere | 1000.0 | 43200 | > th | dose independent | no | NA | NA |
| 953 | 182.37 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 966 | 182.38 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 973 | 182.39 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 975 | 182.39 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 978 | 182.40 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 992 | 182.41 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 8 | 5 |