FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0233900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0466) R2 : 0.00282
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.111 (0.0982) R2dN8 : 0.00364 R2N8 : 0.00282
σ : 0.878
deviance : 353.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
322.6 0.844 3.17 0.0539 0.169 1.54 0.596 5.38 -0.0883 11.8 89 11 1.73 3.32
337.57 0.856 3.17 0.0754 0.179 1.94 0.3 -- -0.0468 11.2 86.04 14 1.87 2.69
320.79 0.834 3.18 0.0292 0.135 2.1 -- 6.15 -0.135 12.5 87.33 11 1.92 3.93
331.34 0.853 3.17 0.0573 0.133 4.66 -- -- -0.0901 12.9 81.49 7 2.19 3.7
321.33 0.835 3.18 0.0802 -- 2.44 -- 7.67 -0.0751 -- 87.59 11 1.93 3.86
351.89 0.879 3.17 0.0683 0.079 -- 0.675 -- -0.102 8.4 -- -- -- --
352.91 0.88 3.17 0.0927 0.11 -- -- -- -0.1 11.8 -- -- -- --
332.43 0.853 3.17 0.0528 -- 4.62 -- -- -0.0927 -- 81.44 8 2.18 3.66
331.42 0.853 3.17 -- 0.132 4.68 -- -- -0.0964 12.9 81.65 7 2.18 3.65
353.66 0.879 3.17 0.0894 -- -- -- -- -0.102 -- -- -- -- --
353.13 0.879 3.17 -- 0.109 -- -- -- -0.11 11.7 -- -- -- --
332.5 0.852 3.17 -- -- 4.63 -- -- -0.0985 -- 81.44 8 2.18 3.66
353.87 0.878 3.17 -- -- -- -- -- -0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 324.96 humidity 90 10 < th dose independent rect. 1 3
2 327.84 humidity 50 90 < th dose independent rect. 13 1
3 327.84 humidity 50 90 < th dose dependent rect. 13 1
6 329.80 humidity 90 10 < th dose dependent rect. 2 2
11 330.59 humidity 80 90 < th dose independent rect. 2 2
12 330.61 humidity 80 90 < th dose dependent rect. 2 2
46 332.91 radiation 20 10 > th dose independent rect. 15 1
99 333.78 radiation 10 30 > th dose dependent rect. 15 1
101 333.93 temperature 30 10 < th dose independent sin 13 NA
193 334.06 atmosphere 995 10 > th dose independent sin 8 NA
212 334.31 humidity 70 30 < th dose independent rect. 18 1
213 334.35 atmosphere 1000 10 < th dose independent rect. 17 1
220 334.35 atmosphere 1000 10 < th dose dependent rect. 17 1
227 334.36 temperature 30 10 > th dose independent rect. 18 1
342 335.09 humidity 70 90 < th dose dependent rect. 12 1
343 335.12 temperature 30 90 > th dose dependent rect. 17 1
345 335.13 humidity 60 10 < th dose dependent rect. 13 1
440 335.55 atmosphere 1000 30 < th dose dependent rect. 13 6
635 335.61 atmosphere 995 10 < th dose independent sin 8 NA
661 335.68 atmosphere 995 30 < th dose dependent sin 8 NA
841 336.35 wind 7 90 > th dose dependent rect. 18 1
893 336.49 temperature 30 10 > th dose independent sin 12 NA
920 336.58 temperature 20 90 < th dose dependent rect. 1 3
979 336.87 wind 1 90 < th dose dependent rect. 15 2
995 337.18 humidity 60 10 < th dose independent rect. 15 1
1000 337.26 humidity 90 270 < th dose dependent rect. 24 1