Os12g0233500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0233500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.74 | 0.46 | 10.5 | 1.23 | 1.02 | -0.649 | -0.182 | -0.329 | -0.018 | 22.6 | 1015 | 4643 | -- | -- |
| 95.93 | 0.456 | 10.5 | 1.27 | 1.02 | -0.676 | -0.188 | -- | -0.0115 | 22.6 | 1014 | 4619 | -- | -- |
| 95.87 | 0.456 | 10.5 | 1.24 | 1.03 | -0.627 | -- | -0.293 | -0.017 | 22.6 | 1015 | 4658 | -- | -- |
| 95.96 | 0.456 | 10.5 | 1.28 | 1.03 | -0.678 | -- | -- | -0.00716 | 22.6 | 1014 | 4609 | -- | -- |
| 160.62 | 0.59 | 10.4 | 1.24 | -- | -0.66 | -- | -0.297 | -0.0132 | -- | 1015 | 4582 | -- | -- |
| 110.96 | 0.494 | 10.5 | 1.24 | 1.03 | -- | -0.137 | -- | -0.102 | 22.5 | -- | -- | -- | -- |
| 111.04 | 0.493 | 10.5 | 1.25 | 1.03 | -- | -- | -- | -0.102 | 22.5 | -- | -- | -- | -- |
| 160.9 | 0.591 | 10.4 | 1.3 | -- | -0.687 | -- | -- | -0.00612 | -- | 1014 | 4626 | -- | -- |
| 138.44 | 0.548 | 10.5 | -- | 1 | -0.717 | -- | -- | -0.0539 | 22.5 | 1014 | 4080 | -- | -- |
| 176.75 | 0.621 | 10.5 | 1.27 | -- | -- | -- | -- | -0.0973 | -- | -- | -- | -- | -- |
| 152.24 | 0.577 | 10.5 | -- | 1.04 | -- | -- | -- | -0.241 | 22.6 | -- | -- | -- | -- |
| 204.11 | 0.665 | 10.5 | -- | -- | -0.727 | -- | -- | -0.15 | -- | 1014 | 4187 | -- | -- |
| 219.22 | 0.691 | 10.5 | -- | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 91.20 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 2 | 91.30 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 8 | 92.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 22 | 93.45 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 23 | 93.46 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 34 | 93.88 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 35 | 93.89 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 42 | 94.03 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 48 | 94.15 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 77 | 94.69 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 78 | 94.75 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 90 | 94.86 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 91 | 94.86 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 94 | 94.87 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 158 | 95.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 174 | 95.28 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 194 | 95.35 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 208 | 95.40 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 223 | 95.45 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 3 | NA |
| 228 | 95.46 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 237 | 95.47 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 238 | 95.47 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 247 | 95.48 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 5 | 12 |
| 248 | 95.48 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 5 | 13 |
| 253 | 95.49 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 267 | 95.49 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 23 | 14 |
| 279 | 95.51 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 295 | 95.52 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 1 | NA |
| 296 | 95.52 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 1 | NA |
| 324 | 95.53 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 20 | 16 |
| 340 | 95.55 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 378 | 95.57 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 4 | 17 |
| 444 | 95.61 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 447 | 95.62 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 485 | 95.64 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 528 | 95.67 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 730 | 95.80 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 771 | 95.83 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 839 | 95.88 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 870 | 95.91 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 871 | 95.91 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 946 | 95.95 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |